Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47098 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00203 * 2 1 3 5 5 H 1.07993 * 120.00180 * 239.99623 * 4 2 1 6 6 C 1.37878 * 119.99873 * 59.99688 * 4 2 1 7 7 N 1.31514 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47175 * 90.00064 * 8 6 4 10 10 H 1.48506 * 109.47253 * 210.00087 * 8 6 4 11 11 H 1.48499 * 109.47194 * 329.99974 * 8 6 4 12 12 N 1.46899 * 109.47654 * 120.00185 * 2 1 3 13 13 C 1.46894 * 111.00138 * 275.00198 * 12 2 1 14 14 C 1.53003 * 109.47268 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.34416 * 52.71270 * 14 13 12 16 16 C 1.51104 * 110.61990 * 290.50712 * 14 13 12 17 17 C 1.30527 * 111.10149 * 224.96950 * 16 14 13 18 18 C 1.51104 * 111.10523 * 359.61668 * 17 16 14 19 19 C 1.54632 * 104.72591 * 16.67933 * 18 17 16 20 20 H 1.08989 * 109.47585 * 60.00042 * 1 2 3 21 21 H 1.09006 * 109.46624 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46815 * 299.99152 * 1 2 3 23 23 H 0.96999 * 120.00351 * 179.97438 * 7 6 4 24 24 H 1.00903 * 110.99885 * 38.95380 * 12 2 1 25 25 H 1.09003 * 109.47244 * 59.99513 * 13 12 2 26 26 H 1.09005 * 109.47151 * 300.00084 * 13 12 2 27 27 H 1.07991 * 124.44977 * 44.85291 * 16 14 13 28 28 H 1.08002 * 124.44912 * 179.88660 * 17 16 14 29 29 H 1.09001 * 110.38851 * 135.49277 * 18 17 16 30 30 H 1.09002 * 110.38820 * 257.86729 * 18 17 16 31 31 H 1.09002 * 111.03487 * 93.39802 * 19 18 17 32 32 H 1.09000 * 111.03782 * 217.29838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 7 2.0198 -0.6925 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5953 -0.5333 3.5744 15 1 3.5313 -1.0415 3.3428 16 6 1.5656 -1.5296 4.0543 17 6 1.4325 -1.4798 5.3518 18 6 2.3581 -0.4486 5.9545 19 6 2.7889 0.4373 4.7625 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 0.7085 1.1614 -3.4843 24 1 1.4497 -1.4980 1.4100 25 1 1.0872 0.6162 2.5525 26 1 2.7589 1.0462 2.1181 27 1 1.0111 -2.1942 3.4084 28 1 0.7535 -2.0978 5.9205 29 1 1.8296 0.1471 6.6988 30 1 3.2265 -0.9327 6.4012 31 1 2.1393 1.3074 4.6669 32 1 3.8321 0.7389 4.8561 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711761745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = 5.372221 kcal Electronic energy + Delta-G solvation = -12192.604236 eV Core-core repulsion = 10152.799276 eV Total energy + Delta-G solvation = -2039.804960 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.70101 -35.62831 -32.52950 -29.94631 -28.81885 -26.84721 -25.09375 -22.82214 -20.46903 -19.96863 -18.28009 -16.37649 -15.84670 -15.14927 -14.62357 -14.00178 -13.23306 -13.02720 -12.06226 -11.98472 -11.75042 -11.57630 -11.53088 -11.10486 -11.06216 -10.82917 -10.74332 -10.50907 -10.19491 -10.09695 -9.71265 -8.95606 -8.69008 -8.32538 -7.15279 -5.94466 -3.97635 2.45899 3.35082 3.41172 3.46219 4.47297 4.79226 4.84176 5.11107 5.36853 5.41897 5.51522 5.66712 5.82201 5.86766 5.93033 6.08844 6.23867 6.26360 6.48844 6.60517 6.73866 6.74589 6.89085 7.08226 7.15775 7.43888 7.78297 7.93666 8.33275 8.61365 8.68682 9.09974 9.67660 11.12632 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074147 B = 0.007141 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.538121 B = 3919.916866 C = 3983.022143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.685 5.685 13 C 0.070 3.930 14 C -0.069 4.069 15 H 0.088 0.912 16 C -0.142 4.142 17 C -0.189 4.189 18 C -0.097 4.097 19 C -0.121 4.121 20 H 0.088 0.912 21 H 0.026 0.974 22 H 0.004 0.996 23 H 0.259 0.741 24 H 0.323 0.677 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -1.858 12.758 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.060 4.060 14 C -0.088 4.088 15 H 0.106 0.894 16 C -0.160 4.160 17 C -0.207 4.207 18 C -0.134 4.134 19 C -0.159 4.159 20 H 0.107 0.893 21 H 0.046 0.954 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.660 -1.642 12.437 12.654 hybrid contribution -0.838 -0.376 -0.694 1.152 sum 0.821 -2.018 11.743 11.943 Atomic orbital electron populations 1.22424 1.00819 0.99095 1.00422 1.19173 0.89542 0.94424 0.86675 0.94966 1.21188 1.30053 1.12356 0.89673 0.91973 1.24963 0.95406 0.95225 0.99051 1.69888 1.37456 1.23265 1.23270 0.86508 0.79229 0.79224 0.82478 1.20868 1.21395 1.19885 1.60828 1.57953 1.09130 1.03523 1.21877 0.98216 0.95650 0.90251 1.21141 0.98280 0.94648 0.94716 0.89382 1.23389 0.97833 0.98637 0.96092 1.23183 1.00573 1.00838 0.96129 1.21312 0.98085 0.96007 0.97965 1.22509 1.01319 0.97912 0.94171 0.89315 0.95448 0.97666 0.93124 0.86005 0.96386 0.91752 0.86072 0.86449 0.91801 0.91217 0.91194 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.94 37.16 0.33 -3.83 16 2 C 0.21 5.42 2.57 -68.86 -0.18 5.24 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.98 8.84 -34.44 -0.30 -14.29 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.18 11.32 55.43 0.63 -25.55 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.95 6.23 -107.95 -0.67 -15.62 16 13 C 0.07 1.30 4.87 -3.83 -0.02 1.28 16 14 C -0.07 -1.05 3.12 -90.71 -0.28 -1.34 16 15 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.14 -2.03 9.65 -35.70 -0.34 -2.37 16 17 C -0.19 -2.37 10.77 -35.70 -0.38 -2.75 16 18 C -0.10 -1.10 6.81 -26.83 -0.18 -1.28 16 19 C -0.12 -1.53 6.71 -25.01 -0.17 -1.70 16 20 H 0.09 2.42 6.07 -51.94 -0.32 2.11 16 21 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 22 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.32 6.70 7.39 -39.29 -0.29 6.41 16 25 H 0.02 0.34 7.42 -51.93 -0.39 -0.04 16 26 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 27 H 0.12 1.74 7.43 -52.49 -0.39 1.35 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -28.86 260.42 -7.85 -36.72 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.08 Total: 3.38 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.63 Total: -19.62 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.05 Total: -41.18 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.86 -7.85 -36.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711761745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.087 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds