Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47098 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00203 * 2 1 3 5 5 H 1.07993 * 120.00180 * 239.99623 * 4 2 1 6 6 C 1.37878 * 119.99873 * 59.99688 * 4 2 1 7 7 N 1.31514 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47175 * 90.00064 * 8 6 4 10 10 H 1.48506 * 109.47253 * 210.00087 * 8 6 4 11 11 H 1.48499 * 109.47194 * 329.99974 * 8 6 4 12 12 N 1.46899 * 109.47654 * 120.00185 * 2 1 3 13 13 C 1.46894 * 111.00138 * 275.00198 * 12 2 1 14 14 C 1.53003 * 109.47268 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.34416 * 52.71270 * 14 13 12 16 16 C 1.51104 * 110.61990 * 290.50712 * 14 13 12 17 17 C 1.30527 * 111.10149 * 224.96950 * 16 14 13 18 18 C 1.51104 * 111.10523 * 359.61668 * 17 16 14 19 19 C 1.54632 * 104.72591 * 16.67933 * 18 17 16 20 20 H 1.08989 * 109.47585 * 60.00042 * 1 2 3 21 21 H 1.09006 * 109.46624 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46815 * 299.99152 * 1 2 3 23 23 H 0.96999 * 120.00351 * 179.97438 * 7 6 4 24 24 H 1.00903 * 110.99885 * 38.95380 * 12 2 1 25 25 H 1.09003 * 109.47244 * 59.99513 * 13 12 2 26 26 H 1.09005 * 109.47151 * 300.00084 * 13 12 2 27 27 H 1.07991 * 124.44977 * 44.85291 * 16 14 13 28 28 H 1.08002 * 124.44912 * 179.88660 * 17 16 14 29 29 H 1.09001 * 110.38851 * 135.49277 * 18 17 16 30 30 H 1.09002 * 110.38820 * 257.86729 * 18 17 16 31 31 H 1.09002 * 111.03487 * 93.39802 * 19 18 17 32 32 H 1.09000 * 111.03782 * 217.29838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 7 2.0198 -0.6925 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5953 -0.5333 3.5744 15 1 3.5313 -1.0415 3.3428 16 6 1.5656 -1.5296 4.0543 17 6 1.4325 -1.4798 5.3518 18 6 2.3581 -0.4486 5.9545 19 6 2.7889 0.4373 4.7625 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 0.7085 1.1614 -3.4843 24 1 1.4497 -1.4980 1.4100 25 1 1.0872 0.6162 2.5525 26 1 2.7589 1.0462 2.1181 27 1 1.0111 -2.1942 3.4084 28 1 0.7535 -2.0978 5.9205 29 1 1.8296 0.1471 6.6988 30 1 3.2265 -0.9327 6.4012 31 1 2.1393 1.3074 4.6669 32 1 3.8321 0.7389 4.8561 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711761745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = -12.172404 kcal Electronic energy + Delta-G solvation = -12193.365028 eV Core-core repulsion = 10152.799276 eV Total energy + Delta-G solvation = -2040.565752 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85727 -37.43176 -34.50502 -31.60504 -29.88419 -28.39375 -27.24358 -24.28208 -22.20844 -21.30908 -19.38037 -18.40767 -17.01414 -16.79943 -16.41628 -15.40910 -14.94501 -14.82634 -13.71358 -13.65269 -13.18794 -12.97725 -12.76783 -12.69750 -12.64373 -12.50086 -12.18258 -12.12815 -12.02970 -11.70862 -11.42069 -10.99268 -10.49506 -9.74809 -8.95885 -8.10049 -6.21854 1.42354 1.43147 1.43647 1.55246 2.44215 3.17831 3.60225 3.78810 3.86912 4.20796 4.38716 4.50255 4.64563 4.66170 4.76256 4.84012 4.89598 5.00657 5.03129 5.08331 5.14263 5.29435 5.39785 5.47090 5.67455 5.68164 5.81660 6.04918 6.26876 6.65573 6.83867 6.94438 7.48439 8.95708 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074147 B = 0.007141 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.538121 B = 3919.916866 C = 3983.022143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.074 3.926 14 C -0.064 4.064 15 H 0.077 0.923 16 C -0.176 4.176 17 C -0.167 4.167 18 C -0.096 4.096 19 C -0.120 4.120 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.022 0.978 23 H 0.261 0.739 24 H 0.330 0.670 25 H 0.014 0.986 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -2.581 13.965 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.317 5.317 13 C -0.056 4.056 14 C -0.083 4.083 15 H 0.096 0.904 16 C -0.194 4.194 17 C -0.185 4.185 18 C -0.132 4.132 19 C -0.158 4.158 20 H 0.081 0.919 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.852 -2.371 13.665 13.992 hybrid contribution -0.901 -0.125 -0.997 1.350 sum 0.951 -2.496 12.667 12.946 Atomic orbital electron populations 1.22226 1.00067 0.99185 0.99942 1.18957 0.90036 0.92691 0.87880 0.98261 1.21474 1.30483 1.12491 0.91116 0.92726 1.25765 0.95450 0.95889 1.02019 1.70015 1.38079 1.24315 1.24041 0.85471 0.78786 0.78196 0.78625 1.19982 1.20864 1.19515 1.60706 1.57725 1.09692 1.03617 1.21904 0.97853 0.95275 0.90560 1.21056 0.97985 0.95190 0.94025 0.90442 1.23322 0.99148 0.99840 0.97066 1.23519 0.99546 0.99935 0.95507 1.21374 0.98608 0.95645 0.97610 1.22529 1.02244 0.97492 0.93496 0.91895 0.94932 0.95907 0.92961 0.85224 0.96804 0.92962 0.86754 0.84358 0.89879 0.89612 0.91379 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.74 8.94 71.98 0.64 -7.10 16 2 C 0.21 11.25 2.57 44.17 0.11 11.37 16 3 H 0.00 -0.03 7.80 -2.39 -0.02 -0.05 16 4 C -0.52 -29.67 8.84 25.60 0.23 -29.44 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.38 5.30 84.65 0.45 0.83 16 7 N -0.92 -54.47 11.32 21.45 0.24 -54.23 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.69 -30.43 6.23 -495.45 -3.09 -33.51 16 13 C 0.07 2.75 4.87 86.31 0.42 3.17 16 14 C -0.06 -1.89 3.12 -10.85 -0.03 -1.93 16 15 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.18 -4.80 9.65 26.26 0.25 -4.55 16 17 C -0.17 -3.71 10.77 26.26 0.28 -3.42 16 18 C -0.10 -1.85 6.81 30.53 0.21 -1.64 16 19 C -0.12 -2.78 6.71 31.71 0.21 -2.57 16 20 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 21 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 22 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.33 13.78 7.39 -89.69 -0.66 13.12 16 25 H 0.01 0.53 7.42 -2.39 -0.02 0.51 16 26 H 0.05 2.04 8.06 -2.38 -0.02 2.02 16 27 H 0.11 3.22 7.43 -2.92 -0.02 3.20 16 28 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.61 7.91 -2.39 -0.02 1.59 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -61.34 260.42 2.37 -58.96 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.42 Total: 17.27 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 2.78 Total: -35.29 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.84 Total: -87.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.34 2.37 -58.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711761745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.791 kcal (2) G-P(sol) polarization free energy of solvation -61.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds