Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50707 * 109.46980 * 175.00014 * 4 2 1 6 6 H 1.07996 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00371 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99759 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47270 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46887 * 119.99885 * 9 7 5 12 12 H 1.48497 * 109.47208 * 239.99791 * 9 7 5 13 13 N 1.46898 * 109.47006 * 119.99780 * 2 1 3 14 14 C 1.46899 * 111.00287 * 274.99842 * 13 2 1 15 15 H 1.09005 * 115.54651 * 350.58437 * 14 13 2 16 16 C 1.52996 * 117.50073 * 136.25441 * 14 13 2 17 17 C 1.52992 * 117.49693 * 204.91468 * 14 13 2 18 18 C 1.52997 * 138.58530 * 121.62005 * 17 14 13 19 19 C 1.52989 * 138.59395 * 23.40201 * 17 14 13 20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 24 24 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 25 25 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 26 26 H 1.00901 * 111.00448 * 38.95578 * 13 2 1 27 27 H 1.08996 * 117.49741 * 214.97783 * 16 14 13 28 28 H 1.09002 * 117.49658 * 0.02562 * 16 14 13 29 29 H 1.08998 * 117.50297 * 336.59156 * 18 17 14 30 30 H 1.09000 * 117.49555 * 121.61175 * 18 17 14 31 31 H 1.08999 * 117.50341 * 238.38376 * 19 17 14 32 32 H 1.09006 * 117.49535 * 23.37848 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5393 7 6 4.2303 -1.1929 -2.3583 8 7 3.5762 -1.8363 -3.3005 9 14 6.0919 -1.0604 -2.4374 10 1 6.5836 -0.2901 -1.2670 11 1 6.6861 -2.4213 -2.4199 12 1 6.4860 -0.3643 -3.6885 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 1 1.9233 1.2762 2.1172 16 6 1.5653 -0.2933 3.6912 17 6 3.0689 -0.1151 3.4665 18 6 4.2667 0.5241 4.1720 19 6 4.3603 -0.9133 3.6561 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7516 -1.7716 -1.2056 24 1 1.6053 -0.2618 -2.1369 25 1 4.0605 -2.2432 -4.0359 26 1 1.4496 -1.4979 1.4101 27 1 1.0662 0.4208 4.3460 28 1 1.1788 -1.3120 3.7242 29 1 4.8201 1.2906 3.6295 30 1 4.1975 0.6683 5.2502 31 1 4.3528 -1.7147 4.3948 32 1 4.9751 -1.0927 2.7740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715223112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = 48.403996 kcal Electronic energy + Delta-G solvation = -12215.231473 eV Core-core repulsion = 10177.292510 eV Total energy + Delta-G solvation = -2037.938962 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.28133 -35.76414 -32.81348 -31.70972 -28.21405 -27.18956 -23.02701 -22.11968 -21.32033 -19.74167 -18.70559 -16.16291 -15.16396 -14.98130 -14.70241 -14.28525 -13.53917 -13.09728 -12.74197 -12.06619 -11.72415 -11.47844 -11.33087 -11.19604 -10.98427 -10.61995 -10.48152 -10.11890 -10.02617 -9.71592 -9.61097 -9.09373 -8.92538 -8.22564 -7.42024 -5.84585 -3.81744 3.40473 3.47646 3.53369 3.94295 4.04686 4.59648 4.60983 4.92538 5.14531 5.35588 5.52986 5.74310 5.80550 5.81351 5.85959 5.95810 5.97321 6.02599 6.08126 6.19767 6.22093 6.46801 6.50573 6.64877 7.04664 7.60924 7.72039 8.05226 8.09502 8.20070 8.63860 9.24003 9.79423 11.27656 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.011137 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.773039 B = 2513.536046 C = 3300.958595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.631 5.631 14 C 0.089 3.911 15 H 0.103 0.897 16 C -0.163 4.163 17 C -0.223 4.223 18 C -0.137 4.137 19 C -0.121 4.121 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.056 0.944 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.256 0.744 26 H 0.335 0.665 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 3.513 12.144 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.259 5.259 14 C -0.023 4.023 15 H 0.121 0.879 16 C -0.201 4.201 17 C -0.225 4.225 18 C -0.174 4.174 19 C -0.158 4.158 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.155 0.845 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.537 3.490 11.777 12.542 hybrid contribution 0.112 0.013 0.153 0.190 sum -2.425 3.503 11.930 12.668 Atomic orbital electron populations 1.22598 0.99313 1.01240 1.00708 1.21898 0.90002 0.98114 0.91908 0.91646 1.19133 0.96323 0.95409 0.89714 1.21192 0.91891 1.32648 1.06677 0.92314 1.25008 0.97986 0.95986 0.96072 1.69975 1.35043 1.37197 1.12394 0.86581 0.86539 0.77543 0.77585 1.19845 1.21321 1.21444 1.60112 1.56669 1.07694 1.01427 1.22192 0.98356 0.96334 0.85416 0.87949 1.23275 0.93353 1.01871 1.01649 1.21730 0.87460 1.07907 1.05407 1.22601 0.99069 0.96908 0.98816 1.22493 0.97540 0.93440 1.02313 0.93039 0.94244 0.92476 0.96491 0.96342 0.93438 0.84511 0.89346 0.88953 0.88942 0.89411 0.89541 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 37.16 0.34 -2.68 16 2 C 0.09 1.83 2.49 -67.71 -0.17 1.66 16 3 H 0.07 1.37 7.57 -51.93 -0.39 0.97 16 4 C 0.03 0.81 4.65 -27.88 -0.13 0.68 16 5 C -0.49 -13.92 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 9 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.63 -12.13 6.24 -99.75 -0.62 -12.75 16 14 C 0.09 1.46 6.09 -67.72 -0.41 1.05 16 15 H 0.10 1.65 7.60 -51.93 -0.39 1.25 16 16 C -0.16 -2.23 10.23 -26.70 -0.27 -2.51 16 17 C -0.22 -3.49 5.60 -154.48 -0.87 -4.35 16 18 C -0.14 -1.87 10.53 -26.73 -0.28 -2.15 16 19 C -0.12 -1.83 10.53 -26.74 -0.28 -2.11 16 20 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 21 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.34 6.04 8.26 -39.29 -0.32 5.72 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 272.89 15.07 4.11 4.11 Total: -1.00 -30.52 272.89 -8.57 -39.09 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.30 Total: 2.44 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.47 Total: -23.31 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.11 Total: -39.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.52 -8.57 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715223112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.490 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds