Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50707 * 109.46980 * 175.00014 * 4 2 1 6 6 H 1.07996 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00371 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99759 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47270 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46887 * 119.99885 * 9 7 5 12 12 H 1.48497 * 109.47208 * 239.99791 * 9 7 5 13 13 N 1.46898 * 109.47006 * 119.99780 * 2 1 3 14 14 C 1.46899 * 111.00287 * 274.99842 * 13 2 1 15 15 H 1.09005 * 115.54651 * 350.58437 * 14 13 2 16 16 C 1.52996 * 117.50073 * 136.25441 * 14 13 2 17 17 C 1.52992 * 117.49693 * 204.91468 * 14 13 2 18 18 C 1.52997 * 138.58530 * 121.62005 * 17 14 13 19 19 C 1.52989 * 138.59395 * 23.40201 * 17 14 13 20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 24 24 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 25 25 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 26 26 H 1.00901 * 111.00448 * 38.95578 * 13 2 1 27 27 H 1.08996 * 117.49741 * 214.97783 * 16 14 13 28 28 H 1.09002 * 117.49658 * 0.02562 * 16 14 13 29 29 H 1.08998 * 117.50297 * 336.59156 * 18 17 14 30 30 H 1.09000 * 117.49555 * 121.61175 * 18 17 14 31 31 H 1.08999 * 117.50341 * 238.38376 * 19 17 14 32 32 H 1.09006 * 117.49535 * 23.37848 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5393 7 6 4.2303 -1.1929 -2.3583 8 7 3.5762 -1.8363 -3.3005 9 14 6.0919 -1.0604 -2.4374 10 1 6.5836 -0.2901 -1.2670 11 1 6.6861 -2.4213 -2.4199 12 1 6.4860 -0.3643 -3.6885 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 1 1.9233 1.2762 2.1172 16 6 1.5653 -0.2933 3.6912 17 6 3.0689 -0.1151 3.4665 18 6 4.2667 0.5241 4.1720 19 6 4.3603 -0.9133 3.6561 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7516 -1.7716 -1.2056 24 1 1.6053 -0.2618 -2.1369 25 1 4.0605 -2.2432 -4.0359 26 1 1.4496 -1.4979 1.4101 27 1 1.0662 0.4208 4.3460 28 1 1.1788 -1.3120 3.7242 29 1 4.8201 1.2906 3.6295 30 1 4.1975 0.6683 5.2502 31 1 4.3528 -1.7147 4.3948 32 1 4.9751 -1.0927 2.7740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715223112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = 29.644492 kcal Electronic energy + Delta-G solvation = -12216.044946 eV Core-core repulsion = 10177.292510 eV Total energy + Delta-G solvation = -2038.752435 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.54101 -37.29092 -34.76886 -33.23149 -29.87780 -28.93203 -25.07274 -23.24498 -22.53518 -21.44431 -19.92042 -18.38110 -16.65766 -16.56840 -16.06339 -15.79246 -15.01764 -14.56828 -14.37784 -13.84059 -13.42884 -13.21910 -12.80914 -12.59280 -12.38403 -12.35250 -12.30250 -11.94523 -11.53242 -11.20376 -10.99368 -10.75153 -10.65971 -10.49916 -8.83369 -8.10831 -6.15346 1.38960 1.39826 1.53039 2.46183 2.75192 2.89056 3.21931 3.39234 3.70722 3.99142 4.13738 4.29346 4.42874 4.55536 4.72561 4.73244 4.78728 4.87220 4.91970 4.95001 5.06732 5.09811 5.23803 5.27668 5.34674 5.50595 5.68537 5.89262 6.34514 6.51104 6.71012 6.98558 7.50053 9.01455 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.011137 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.773039 B = 2513.536046 C = 3300.958595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 H 0.058 0.942 4 C 0.036 3.964 5 C -0.496 4.496 6 H 0.052 0.948 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.651 5.651 14 C 0.066 3.934 15 H 0.104 0.896 16 C -0.130 4.130 17 C -0.249 4.249 18 C -0.118 4.118 19 C -0.134 4.134 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.056 0.944 23 H -0.009 1.009 24 H -0.005 1.005 25 H 0.259 0.741 26 H 0.339 0.661 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 4.173 14.083 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 H 0.076 0.924 4 C -0.002 4.002 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.280 5.280 14 C -0.045 4.045 15 H 0.122 0.878 16 C -0.168 4.168 17 C -0.251 4.251 18 C -0.155 4.155 19 C -0.171 4.171 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.009 0.991 24 H 0.013 0.987 25 H 0.067 0.933 26 H 0.159 0.841 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.481 4.161 13.733 14.563 hybrid contribution 0.094 -0.199 -0.443 0.494 sum -2.387 3.962 13.291 14.073 Atomic orbital electron populations 1.22437 0.96278 1.01842 1.02096 1.21532 0.92358 0.96640 0.90285 0.92391 1.19021 0.95097 0.94245 0.91806 1.21482 0.93458 1.32197 1.06331 0.92993 1.25862 1.02924 0.95738 0.95804 1.70096 1.36964 1.38136 1.13063 0.85523 0.80681 0.77695 0.77870 1.19233 1.20815 1.20580 1.59939 1.57289 1.08612 1.02199 1.22200 1.00879 0.95942 0.85513 0.87819 1.23285 0.91835 1.02627 0.99096 1.22000 0.88748 1.08940 1.05416 1.22687 0.97160 0.95465 1.00194 1.22485 0.97364 0.95254 1.02018 0.92838 0.91385 0.92475 0.99085 0.98725 0.93253 0.84128 0.86747 0.88327 0.89328 0.86610 0.87781 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.44 9.16 71.98 0.66 -4.78 16 2 C 0.10 4.15 2.49 44.92 0.11 4.26 16 3 H 0.06 2.43 7.57 -2.39 -0.02 2.41 16 4 C 0.04 1.91 4.65 29.85 0.14 2.04 16 5 C -0.50 -29.07 8.84 25.60 0.23 -28.84 16 6 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 9 Si 0.96 46.68 29.54 68.60 2.03 48.71 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.65 -24.82 6.24 -469.49 -2.93 -27.75 16 14 C 0.07 2.05 6.09 44.91 0.27 2.33 16 15 H 0.10 3.18 7.60 -2.38 -0.02 3.16 16 16 C -0.13 -3.15 10.23 30.62 0.31 -2.83 16 17 C -0.25 -7.27 5.60 -52.17 -0.29 -7.57 16 18 C -0.12 -2.95 10.53 30.59 0.32 -2.62 16 19 C -0.13 -3.90 10.53 30.59 0.32 -3.58 16 20 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 21 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.34 12.04 8.26 -89.69 -0.74 11.30 16 27 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -65.96 272.89 2.26 -63.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.34 Total: 15.51 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 2.54 Total: -41.58 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.65 Total: -86.33 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -65.96 2.26 -63.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715223112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.347 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds