Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52993 * 109.47524 * 120.00917 * 2 1 3 5 5 C 1.50701 * 109.47228 * 185.00149 * 4 2 1 6 6 H 1.07998 * 119.99707 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00049 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00249 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47302 * 119.99806 * 9 7 5 12 12 H 1.48506 * 109.47370 * 240.00290 * 9 7 5 13 13 N 1.46907 * 109.46813 * 240.00827 * 2 1 3 14 14 C 1.46906 * 110.99894 * 84.99661 * 13 2 1 15 15 H 1.08994 * 115.54988 * 350.67005 * 14 13 2 16 16 C 1.53004 * 117.51369 * 136.37132 * 14 13 2 17 17 C 1.52992 * 117.49520 * 204.99763 * 14 13 2 18 18 C 1.52995 * 138.58961 * 23.38667 * 17 14 13 19 19 C 1.53005 * 60.03007 * 130.90188 * 18 17 14 20 20 H 1.09005 * 109.46778 * 299.98829 * 1 2 3 21 21 H 1.08998 * 109.47622 * 59.99412 * 1 2 3 22 22 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 304.99865 * 4 2 1 24 24 H 1.08992 * 109.47358 * 64.99609 * 4 2 1 25 25 H 0.97001 * 120.00000 * 179.97438 * 8 7 5 26 26 H 1.00889 * 110.99676 * 208.95175 * 13 2 1 27 27 H 1.08994 * 117.50162 * 359.97438 * 16 14 13 28 28 H 1.08996 * 117.49718 * 214.96836 * 16 14 13 29 29 H 1.09002 * 117.50055 * 23.39855 * 18 17 14 30 30 H 1.09002 * 117.49519 * 238.40166 * 18 17 14 31 31 H 1.09000 * 117.49916 * 107.48237 * 19 18 17 32 32 H 1.08999 * 117.49608 * 252.47276 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2490 5 6 3.5420 -0.6150 1.3125 6 1 4.0790 -0.0861 0.5390 7 6 4.2305 -1.1928 2.3579 8 7 3.5765 -1.8365 3.3001 9 14 6.0922 -1.0616 2.4362 10 1 6.5839 -0.2930 1.2646 11 1 6.4872 -0.3652 3.6869 12 1 6.6856 -2.4228 2.4190 13 7 2.0196 -0.6924 -1.1996 14 6 2.0823 0.2229 -2.3470 15 1 1.6221 1.1992 -2.1952 16 6 3.3264 0.1587 -3.2353 17 6 1.9927 -0.3906 -3.7456 18 6 1.4528 -1.6586 -4.4100 19 6 1.1092 -0.2856 -4.9911 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6055 -0.2620 2.1369 24 1 1.7517 -1.7716 1.2053 25 1 4.0610 -2.2433 4.0355 26 1 2.9172 -1.1203 -1.0290 27 1 4.0988 -0.5625 -2.9682 28 1 3.6847 1.0927 -3.6679 29 1 0.6600 -2.1992 -3.8930 30 1 2.1597 -2.2768 -4.9635 31 1 1.5901 -0.0004 -5.9268 32 1 0.0900 0.0769 -4.8569 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715223120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = 43.212837 kcal Electronic energy + Delta-G solvation = -12167.287858 eV Core-core repulsion = 10129.123790 eV Total energy + Delta-G solvation = -2038.164068 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.25848 -35.73791 -32.86405 -31.78827 -28.16225 -27.38295 -23.14044 -22.20559 -21.15654 -19.48141 -18.70714 -16.34418 -15.21401 -15.02227 -14.76266 -14.40115 -13.98501 -12.89315 -12.58665 -11.81450 -11.62404 -11.41102 -11.31063 -11.19813 -11.09692 -10.83373 -10.52009 -10.43982 -9.88942 -9.74437 -9.61660 -9.14973 -9.05729 -8.40479 -7.50408 -6.03516 -4.06720 3.28480 3.36480 3.39534 3.90877 4.05774 4.42706 4.58595 4.95050 5.14045 5.29626 5.43377 5.74578 5.83730 5.88132 5.93946 5.98104 6.01864 6.09331 6.20823 6.23145 6.34912 6.39164 6.57230 6.92670 6.94604 7.54476 7.63788 7.96087 8.06380 8.26366 8.36646 8.99802 9.57701 11.07450 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.009013 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.724345 B = 3105.885470 C = 3550.618153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.032 0.968 4 C 0.019 3.981 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.651 5.651 14 C 0.088 3.912 15 H 0.102 0.898 16 C -0.158 4.158 17 C -0.226 4.226 18 C -0.123 4.123 19 C -0.137 4.137 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.023 0.977 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.359 0.641 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 3.146 -11.746 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.050 0.950 4 C -0.018 4.018 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.283 5.283 14 C -0.024 4.024 15 H 0.119 0.881 16 C -0.197 4.197 17 C -0.228 4.228 18 C -0.160 4.160 19 C -0.174 4.174 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.182 0.818 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.618 2.782 -11.693 12.552 hybrid contribution 1.874 0.534 0.307 1.972 sum -1.744 3.316 -11.386 11.987 Atomic orbital electron populations 1.21810 0.96664 1.01357 0.99492 1.21675 0.93380 0.95987 0.91033 0.94982 1.19298 0.95495 0.96233 0.90813 1.21227 0.92213 1.34467 1.08352 0.92844 1.24994 0.98283 0.95172 0.95689 1.69974 1.35423 1.35656 1.11940 0.86576 0.85926 0.77784 0.77950 1.19801 1.21032 1.20974 1.60186 1.34215 1.30374 1.03561 1.22181 0.98185 0.95095 0.86890 0.88060 1.23248 0.90870 1.01691 1.03868 1.21807 1.00886 1.03570 0.96513 1.22456 1.02249 0.89792 1.01455 1.22599 0.99126 1.00734 0.94955 0.93268 0.94462 0.92691 0.95901 0.95577 0.92989 0.81812 0.88555 0.89219 0.88557 0.89437 0.89347 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.42 37.16 0.35 -2.14 16 2 C 0.09 1.86 2.49 -67.71 -0.17 1.69 16 3 H 0.03 0.68 7.73 -51.93 -0.40 0.28 16 4 C 0.02 0.48 4.57 -27.89 -0.13 0.36 16 5 C -0.52 -14.42 8.12 -34.44 -0.28 -14.70 16 6 H 0.05 1.43 7.49 -52.49 -0.39 1.04 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.65 -12.91 6.59 -99.74 -0.66 -13.57 16 14 C 0.09 1.50 6.02 -67.71 -0.41 1.09 16 15 H 0.10 1.67 7.77 -51.93 -0.40 1.26 16 16 C -0.16 -2.42 10.23 -26.73 -0.27 -2.69 16 17 C -0.23 -3.44 5.60 -154.48 -0.87 -4.31 16 18 C -0.12 -1.68 10.53 -26.73 -0.28 -1.96 16 19 C -0.14 -1.71 10.53 -26.69 -0.28 -1.99 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.36 7.70 6.99 -39.30 -0.27 7.43 16 27 H 0.10 1.51 8.09 -51.93 -0.42 1.09 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -28.82 271.44 -8.54 -37.35 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.25 Total: 4.55 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.43 Total: -23.03 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.08 Total: -39.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.82 -8.54 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715223120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.564 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds