Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52993 * 109.47524 * 120.00917 * 2 1 3 5 5 C 1.50701 * 109.47228 * 185.00149 * 4 2 1 6 6 H 1.07998 * 119.99707 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00049 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00249 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47302 * 119.99806 * 9 7 5 12 12 H 1.48506 * 109.47370 * 240.00290 * 9 7 5 13 13 N 1.46907 * 109.46813 * 240.00827 * 2 1 3 14 14 C 1.46906 * 110.99894 * 84.99661 * 13 2 1 15 15 H 1.08994 * 115.54988 * 350.67005 * 14 13 2 16 16 C 1.53004 * 117.51369 * 136.37132 * 14 13 2 17 17 C 1.52992 * 117.49520 * 204.99763 * 14 13 2 18 18 C 1.52995 * 138.58961 * 23.38667 * 17 14 13 19 19 C 1.53005 * 60.03007 * 130.90188 * 18 17 14 20 20 H 1.09005 * 109.46778 * 299.98829 * 1 2 3 21 21 H 1.08998 * 109.47622 * 59.99412 * 1 2 3 22 22 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 304.99865 * 4 2 1 24 24 H 1.08992 * 109.47358 * 64.99609 * 4 2 1 25 25 H 0.97001 * 120.00000 * 179.97438 * 8 7 5 26 26 H 1.00889 * 110.99676 * 208.95175 * 13 2 1 27 27 H 1.08994 * 117.50162 * 359.97438 * 16 14 13 28 28 H 1.08996 * 117.49718 * 214.96836 * 16 14 13 29 29 H 1.09002 * 117.50055 * 23.39855 * 18 17 14 30 30 H 1.09002 * 117.49519 * 238.40166 * 18 17 14 31 31 H 1.09000 * 117.49916 * 107.48237 * 19 18 17 32 32 H 1.08999 * 117.49608 * 252.47276 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2490 5 6 3.5420 -0.6150 1.3125 6 1 4.0790 -0.0861 0.5390 7 6 4.2305 -1.1928 2.3579 8 7 3.5765 -1.8365 3.3001 9 14 6.0922 -1.0616 2.4362 10 1 6.5839 -0.2930 1.2646 11 1 6.4872 -0.3652 3.6869 12 1 6.6856 -2.4228 2.4190 13 7 2.0196 -0.6924 -1.1996 14 6 2.0823 0.2229 -2.3470 15 1 1.6221 1.1992 -2.1952 16 6 3.3264 0.1587 -3.2353 17 6 1.9927 -0.3906 -3.7456 18 6 1.4528 -1.6586 -4.4100 19 6 1.1092 -0.2856 -4.9911 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6055 -0.2620 2.1369 24 1 1.7517 -1.7716 1.2053 25 1 4.0610 -2.2433 4.0355 26 1 2.9172 -1.1203 -1.0290 27 1 4.0988 -0.5625 -2.9682 28 1 3.6847 1.0927 -3.6679 29 1 0.6600 -2.1992 -3.8930 30 1 2.1597 -2.2768 -4.9635 31 1 1.5901 -0.0004 -5.9268 32 1 0.0900 0.0769 -4.8569 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715223120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = 26.141676 kcal Electronic energy + Delta-G solvation = -12168.028119 eV Core-core repulsion = 10129.123790 eV Total energy + Delta-G solvation = -2038.904329 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.53641 -37.31286 -34.75635 -33.28395 -29.77246 -29.24203 -25.14849 -23.22099 -22.48356 -21.19504 -19.89902 -18.51547 -16.82660 -16.57346 -16.06836 -15.78815 -15.46347 -14.66656 -14.08899 -13.58913 -13.42713 -13.08371 -12.77367 -12.67921 -12.56089 -12.34411 -12.28332 -12.12286 -11.53387 -11.12719 -11.04428 -10.73941 -10.70449 -10.58880 -8.99898 -8.20507 -6.31186 1.38700 1.39584 1.51727 2.39567 2.73332 2.88403 3.12746 3.38865 3.69257 3.97295 4.15757 4.32330 4.55012 4.59440 4.70049 4.75942 4.80483 4.86283 4.89943 4.96740 5.07633 5.08575 5.19940 5.32029 5.34851 5.47839 5.56041 5.82781 6.19711 6.43961 6.59819 6.84224 7.37832 8.91471 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.009013 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.724345 B = 3105.885470 C = 3550.618153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.097 3.903 3 H 0.029 0.971 4 C 0.026 3.974 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.655 5.655 14 C 0.064 3.936 15 H 0.107 0.893 16 C -0.151 4.151 17 C -0.241 4.241 18 C -0.129 4.129 19 C -0.112 4.112 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.046 0.954 23 H -0.002 1.002 24 H -0.004 1.004 25 H 0.263 0.737 26 H 0.345 0.655 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 3.980 -13.631 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.047 0.953 4 C -0.011 4.011 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.287 5.287 14 C -0.047 4.047 15 H 0.125 0.875 16 C -0.189 4.189 17 C -0.243 4.243 18 C -0.166 4.166 19 C -0.149 4.149 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.086 3.631 -13.604 14.414 hybrid contribution 1.659 0.262 0.865 1.889 sum -1.427 3.893 -12.739 13.397 Atomic orbital electron populations 1.21714 0.94513 1.01324 1.00912 1.21475 0.95058 0.94970 0.89700 0.95262 1.19151 0.94998 0.94695 0.92284 1.21561 0.93215 1.34111 1.08345 0.92338 1.25907 1.03452 0.94781 0.95311 1.70105 1.37532 1.36754 1.12732 0.85450 0.79689 0.77937 0.78270 1.18619 1.20574 1.20531 1.60237 1.33392 1.31235 1.03795 1.22228 1.00554 0.95184 0.86692 0.87547 1.23231 0.90362 1.02383 1.02964 1.21936 1.00769 1.05502 0.96087 1.22571 1.02273 0.90277 1.01524 1.22751 0.99083 0.98836 0.94250 0.92629 0.92201 0.93437 0.98409 0.98556 0.92805 0.83428 0.89464 0.87240 0.89353 0.88269 0.87117 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 2 C 0.10 4.12 2.49 44.91 0.11 4.24 16 3 H 0.03 1.25 7.73 -2.39 -0.02 1.23 16 4 C 0.03 1.38 4.57 29.85 0.14 1.52 16 5 C -0.53 -29.82 8.12 25.60 0.21 -29.61 16 6 H 0.06 3.14 7.49 -2.91 -0.02 3.12 16 7 C 0.00 0.20 5.46 84.65 0.46 0.67 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.66 -25.98 6.59 -469.46 -3.09 -29.08 16 14 C 0.06 2.11 6.02 44.91 0.27 2.38 16 15 H 0.11 3.33 7.77 -2.39 -0.02 3.31 16 16 C -0.15 -4.34 10.23 30.60 0.31 -4.02 16 17 C -0.24 -6.81 5.60 -52.16 -0.29 -7.10 16 18 C -0.13 -3.26 10.53 30.59 0.32 -2.93 16 19 C -0.11 -2.42 10.53 30.62 0.32 -2.09 16 20 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 21 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.34 15.02 6.99 -89.70 -0.63 14.39 16 27 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -61.70 271.44 2.20 -59.50 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.45 Total: 20.63 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 2.53 Total: -40.88 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.81 Total: -85.38 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -61.70 2.20 -59.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715223120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.646 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds