Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.46898 * 110.99552 * 275.00435 * 13 3 2 15 15 H 1.08998 * 115.55541 * 350.57634 * 14 13 3 16 16 C 1.53001 * 117.49861 * 136.25390 * 14 13 3 17 17 C 1.53001 * 117.49452 * 204.91141 * 14 13 3 18 18 C 1.52998 * 138.58895 * 121.62104 * 17 14 13 19 19 C 1.52994 * 138.58750 * 23.39870 * 17 14 13 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.00896 * 110.99793 * 38.95078 * 13 3 2 27 27 H 1.08996 * 117.49961 * 214.97471 * 16 14 13 28 28 H 1.09003 * 117.50014 * 359.97438 * 16 14 13 29 29 H 1.09000 * 117.49820 * 336.58777 * 18 17 14 30 30 H 1.08993 * 117.49691 * 121.61731 * 18 17 14 31 31 H 1.08994 * 117.49905 * 238.37956 * 19 17 14 32 32 H 1.09001 * 117.49829 * 23.41117 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6515 2.0992 1.2553 14 6 0.2913 2.6466 1.1638 15 1 -0.1541 2.6353 0.1691 16 6 -0.6402 2.4274 2.3576 17 6 -0.0620 3.8178 2.0827 18 6 -0.5533 5.2619 1.9638 19 6 0.6539 4.9344 2.8453 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8292 -0.0604 -2.9503 26 1 1.7343 1.4652 2.0358 27 1 -1.6985 2.2722 2.1483 28 1 -0.2440 1.8766 3.2107 29 1 -0.3644 5.7821 1.0248 30 1 -1.4869 5.5186 2.4642 31 1 0.5142 4.9759 3.9254 32 1 1.6368 5.2392 2.4860 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715318896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = 51.697851 kcal Electronic energy + Delta-G solvation = -12412.682285 eV Core-core repulsion = 10374.886155 eV Total energy + Delta-G solvation = -2037.796130 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.20662 -35.64811 -32.67374 -31.22940 -29.41736 -26.13276 -22.76128 -22.07930 -21.06117 -19.81358 -18.58108 -16.29138 -15.00999 -14.66804 -14.55497 -14.29755 -13.57263 -13.16484 -12.73816 -11.81855 -11.49379 -11.22592 -11.17514 -11.06239 -10.84011 -10.68918 -10.19843 -10.03137 -9.93785 -9.64994 -9.52412 -9.44084 -8.86713 -8.32226 -7.08822 -5.97451 -4.00925 3.35452 3.39213 3.42779 4.06645 4.19654 4.45503 4.77117 5.17313 5.27380 5.32889 5.65635 5.87532 5.96771 6.01966 6.09152 6.13765 6.19938 6.21468 6.26326 6.41718 6.47145 6.50328 6.87307 6.98668 7.23405 7.43144 7.78127 7.90259 8.30504 8.54494 8.62842 9.06181 9.63992 11.08960 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041228 B = 0.009891 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.994457 B = 2830.065041 C = 3297.466624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.219 3.781 4 H 0.035 0.965 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.650 5.650 14 C 0.100 3.900 15 H 0.103 0.897 16 C -0.164 4.164 17 C -0.230 4.230 18 C -0.138 4.138 19 C -0.124 4.124 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.099 0.901 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 3.565 6.260 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C 0.112 3.888 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.278 5.278 14 C -0.012 4.012 15 H 0.121 0.879 16 C -0.203 4.203 17 C -0.232 4.232 18 C -0.175 4.175 19 C -0.161 4.161 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.300 4.048 5.897 9.531 hybrid contribution 0.367 -0.867 -0.048 0.942 sum -5.933 3.181 5.849 8.918 Atomic orbital electron populations 1.22037 0.99410 0.99443 1.00441 1.22275 0.91810 1.02063 1.02827 1.19286 0.95372 0.88529 0.85656 0.94700 1.21132 0.91052 1.36193 1.05202 0.92020 1.24943 0.98245 0.95499 0.95774 1.69867 1.34880 1.39231 1.09618 0.86568 0.85577 0.78192 0.77082 1.20385 1.21455 1.20312 1.60380 1.18542 1.40997 1.07869 1.22234 0.90013 0.95664 0.93294 0.87938 1.23271 0.99144 0.96066 1.01789 1.21917 1.06891 0.86378 1.07985 1.22572 0.98022 0.95427 1.01482 1.22437 0.96653 1.00176 0.96791 0.93873 0.93521 0.94903 0.94860 0.88283 0.92995 0.85155 0.89491 0.89118 0.89057 0.89527 0.89718 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.85 37.16 0.33 -2.72 16 2 C -0.15 -3.51 5.24 -26.74 -0.14 -3.65 16 3 C 0.22 5.45 2.18 -68.86 -0.15 5.30 16 4 H 0.04 0.96 7.57 -51.93 -0.39 0.57 16 5 C -0.50 -13.77 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.50 11.30 55.43 0.63 -24.88 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.65 -14.00 6.47 -100.95 -0.65 -14.65 16 14 C 0.10 1.87 4.11 -67.71 -0.28 1.59 16 15 H 0.10 2.00 7.11 -51.93 -0.37 1.63 16 16 C -0.16 -2.55 9.12 -26.69 -0.24 -2.79 16 17 C -0.23 -3.82 5.60 -154.47 -0.87 -4.68 16 18 C -0.14 -1.94 10.53 -26.73 -0.28 -2.22 16 19 C -0.12 -1.85 10.53 -26.73 -0.28 -2.14 16 20 H 0.04 0.85 8.13 -51.93 -0.42 0.42 16 21 H 0.05 0.83 4.97 -51.93 -0.26 0.57 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 24 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.33 6.79 8.20 -39.29 -0.32 6.47 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -27.91 261.94 -8.40 -36.32 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.99 Total: 6.65 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.31 Total: -23.92 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.03 Total: -39.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.91 -8.40 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715318896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.014 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds