Wall clock time and date at job start Mon Mar 30 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00184 * 2 1 4 4 C 1.53005 * 109.47180 * 125.00112 * 3 2 1 5 5 H 1.08999 * 109.47127 * 55.00165 * 4 3 2 6 6 C 1.53000 * 109.46749 * 174.99859 * 4 3 2 7 7 N 1.46491 * 109.47080 * 295.00211 * 4 3 2 8 8 C 1.36932 * 120.00338 * 120.99370 * 7 4 3 9 9 H 1.08006 * 119.99970 * 218.55092 * 8 7 4 10 10 C 1.38807 * 119.99969 * 38.54492 * 8 7 4 11 11 N 1.31619 * 119.99973 * 15.56594 * 10 8 7 12 12 Si 1.86803 * 120.00183 * 195.56907 * 10 8 7 13 13 H 1.48498 * 109.47266 * 90.00097 * 12 10 8 14 14 H 1.48508 * 109.47022 * 210.00449 * 12 10 8 15 15 H 1.48502 * 109.47136 * 329.99690 * 12 10 8 16 16 C 1.46503 * 119.99983 * 300.99110 * 7 4 3 17 17 C 1.53004 * 117.51774 * 165.61646 * 16 7 4 18 18 C 1.52997 * 117.49927 * 234.24691 * 16 7 4 19 19 H 1.08003 * 120.00044 * 180.02562 * 1 2 3 20 20 H 1.07998 * 119.99874 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.00340 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47350 * 5.00113 * 3 2 1 23 23 H 1.09004 * 109.47025 * 245.00417 * 3 2 1 24 24 H 1.08990 * 109.47563 * 300.00002 * 6 4 3 25 25 H 1.08999 * 109.47056 * 60.00262 * 6 4 3 26 26 H 1.09001 * 109.46589 * 179.97438 * 6 4 3 27 27 H 0.96996 * 120.00177 * 184.97564 * 11 10 8 28 28 H 1.09002 * 115.55334 * 19.92009 * 16 7 4 29 29 H 1.09007 * 117.49852 * 214.96672 * 17 16 7 30 30 H 1.08991 * 117.50034 * 359.97438 * 17 16 7 31 31 H 1.09002 * 117.50256 * 359.97438 * 18 16 7 32 32 H 1.09005 * 117.50373 * 144.99667 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6827 0.4573 1.1403 6 6 3.8876 2.6015 1.1109 7 7 2.2787 1.3222 2.4361 8 6 2.4709 0.3144 3.3429 9 1 1.6302 -0.0895 3.8877 10 6 3.7461 -0.1883 3.5620 11 7 4.7987 0.4841 3.1471 12 14 3.9682 -1.8191 4.4455 13 1 3.9729 -2.9234 3.4527 14 1 5.2571 -1.8110 5.1831 15 1 2.8512 -2.0193 5.4034 16 6 1.3166 2.3898 2.7206 17 6 0.3235 2.1609 3.8619 18 6 1.4759 3.1519 4.0376 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 1.3586 2.1317 0.0896 23 1 2.6212 1.4026 -0.9315 24 1 4.4504 2.6096 0.1776 25 1 3.2400 3.4773 1.1522 26 1 4.5794 2.6217 1.9530 27 1 5.6851 0.1001 3.2351 28 1 0.9665 2.9505 1.8538 29 1 -0.6797 2.5711 3.7460 30 1 0.3857 1.2157 4.4010 31 1 2.2963 2.8588 4.6927 32 1 1.2308 4.2141 4.0374 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715788241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:39 Heat of formation + Delta-G solvation = 44.852581 kcal Electronic energy + Delta-G solvation = -12960.637055 eV Core-core repulsion = 10922.544091 eV Total energy + Delta-G solvation = -2038.092963 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20636 -36.46169 -34.69807 -32.90976 -30.55069 -27.11773 -26.05731 -22.95351 -22.66790 -21.18797 -20.26444 -18.13080 -17.07303 -16.55565 -15.77010 -15.59704 -14.57621 -14.28469 -14.27009 -13.78773 -13.32862 -12.88179 -12.78481 -12.66938 -12.39246 -12.22368 -12.02396 -11.80938 -11.52920 -11.16724 -11.14804 -10.85342 -10.39686 -9.91368 -8.33357 -7.75900 -5.37048 1.43711 1.46551 1.53237 1.68658 2.51318 3.23542 3.50974 3.58726 4.15158 4.34913 4.48110 4.57343 4.59539 4.69313 4.89648 4.93802 4.97674 5.02238 5.05486 5.11806 5.23070 5.32137 5.45717 5.58269 5.73668 5.79145 5.87674 6.06104 6.15498 6.54605 7.27410 7.96354 8.47154 9.19737 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.016183 C = 0.014454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.491013 B = 1729.824404 C = 1936.679960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.103 4.103 4 C 0.196 3.804 5 H 0.048 0.952 6 C -0.138 4.138 7 N -0.555 5.555 8 C -0.254 4.254 9 H 0.052 0.948 10 C -0.031 4.031 11 N -0.911 5.911 12 Si 0.947 3.053 13 H -0.285 1.285 14 H -0.297 1.297 15 H -0.275 1.275 16 C 0.119 3.881 17 C -0.192 4.192 18 C -0.221 4.221 19 H 0.096 0.904 20 H 0.098 0.902 21 H 0.086 0.914 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.247 0.753 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 2.356 -5.076 8.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.149 4.149 3 C -0.141 4.141 4 C 0.090 3.910 5 H 0.067 0.933 6 C -0.196 4.196 7 N -0.272 5.272 8 C -0.385 4.385 9 H 0.069 0.931 10 C -0.228 4.228 11 N -0.554 5.554 12 Si 0.776 3.224 13 H -0.212 1.212 14 H -0.223 1.223 15 H -0.201 1.201 16 C 0.010 3.990 17 C -0.231 4.231 18 C -0.262 4.262 19 H 0.114 0.886 20 H 0.116 0.884 21 H 0.104 0.896 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.018 2.319 -5.032 8.180 hybrid contribution 0.630 -1.014 0.901 1.496 sum -5.388 1.305 -4.131 6.913 Atomic orbital electron populations 1.23660 0.95407 1.01567 1.03359 1.22749 0.96335 0.97972 0.97838 1.21295 0.98886 0.95213 0.98734 1.20096 0.90699 0.96741 0.83433 0.93348 1.22005 0.99649 0.97776 1.00211 1.43490 1.44454 1.23001 1.16233 1.19109 0.90766 1.10834 1.17772 0.93081 1.25797 0.95808 1.01407 0.99817 1.70171 0.97458 1.36080 1.51719 0.85594 0.76645 0.81545 0.78600 1.21209 1.22339 1.20053 1.21249 0.94666 0.92857 0.90188 1.23052 0.94442 1.00093 1.05531 1.23208 1.00279 0.96631 1.06057 0.88552 0.88352 0.89579 0.91611 0.90610 0.93352 0.94044 0.93962 0.94358 0.87163 0.87624 0.91230 0.92827 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.41 14.32 67.79 0.97 -5.44 16 2 C -0.13 -4.68 9.25 25.65 0.24 -4.45 16 3 C -0.10 -3.67 5.08 29.85 0.15 -3.52 16 4 C 0.20 8.73 1.76 44.99 0.08 8.81 16 5 H 0.05 2.51 6.45 -2.39 -0.02 2.49 16 6 C -0.14 -5.81 9.08 71.98 0.65 -5.15 16 7 N -0.55 -26.37 2.39 -654.26 -1.56 -27.93 16 8 C -0.25 -13.59 8.60 84.03 0.72 -12.87 16 9 H 0.05 2.81 6.38 -2.91 -0.02 2.79 16 10 C -0.03 -1.67 4.86 84.86 0.41 -1.26 16 11 N -0.91 -51.85 10.62 21.65 0.23 -51.62 16 12 Si 0.95 44.83 29.59 68.60 2.03 46.86 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 C 0.12 4.90 5.49 44.99 0.25 5.15 16 17 C -0.19 -7.37 9.86 30.60 0.30 -7.07 16 18 C -0.22 -8.92 10.16 30.59 0.31 -8.61 16 19 H 0.10 2.77 8.06 -2.91 -0.02 2.74 16 20 H 0.10 2.85 7.84 -2.91 -0.02 2.83 16 21 H 0.09 3.26 8.06 -2.91 -0.02 3.24 16 22 H 0.07 2.19 6.34 -2.39 -0.02 2.17 16 23 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.59 7.69 -2.39 -0.02 1.57 16 26 H 0.04 2.09 7.06 -2.39 -0.02 2.07 16 27 H 0.25 13.80 8.32 -92.71 -0.77 13.03 16 28 H 0.11 3.99 6.83 -2.39 -0.02 3.98 16 29 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 30 H 0.07 3.00 6.37 -2.39 -0.02 2.99 16 31 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -57.92 262.48 5.85 -52.07 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.07 Total: 15.04 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.09 Total: -34.41 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.33 Total: -79.56 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -57.92 5.85 -52.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715788241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.925 kcal (2) G-P(sol) polarization free energy of solvation -57.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds