Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 115.54905 * 2 1 4 4 C 1.53003 * 117.51717 * 214.30351 * 2 1 3 5 5 C 1.52993 * 117.49981 * 145.67181 * 2 1 3 6 6 H 1.09003 * 117.50228 * 215.02319 * 5 2 1 7 7 C 1.53006 * 117.49973 * 0.02562 * 5 2 1 8 8 H 1.08997 * 115.55338 * 85.66620 * 7 5 2 9 9 C 1.52999 * 117.49690 * 231.37671 * 7 5 2 10 10 C 1.52998 * 60.00063 * 107.48555 * 9 7 5 11 11 H 1.08999 * 117.52141 * 252.51725 * 10 9 7 12 12 N 1.46905 * 117.49658 * 107.48451 * 10 9 7 13 13 C 1.46906 * 110.99572 * 136.37987 * 12 10 9 14 14 C 1.50699 * 109.46771 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99881 * 180.02562 * 14 13 12 17 17 N 1.31526 * 120.00218 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00107 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47095 * 90.00117 * 18 16 14 20 20 H 1.48509 * 109.47244 * 209.99762 * 18 16 14 21 21 H 1.48503 * 109.47113 * 329.99927 * 18 16 14 22 22 H 1.09005 * 109.47032 * 274.32595 * 1 2 3 23 23 H 1.08997 * 109.47437 * 34.32705 * 1 2 3 24 24 H 1.09004 * 109.46700 * 154.32966 * 1 2 3 25 25 H 1.09001 * 117.49658 * 145.02849 * 4 2 1 26 26 H 1.09000 * 117.49643 * 0.02562 * 4 2 1 27 27 H 1.09003 * 117.50034 * 214.97663 * 9 7 5 28 28 H 1.09006 * 117.50186 * 0.02562 * 9 7 5 29 29 H 1.00895 * 111.00433 * 260.33253 * 12 10 9 30 30 H 1.08991 * 109.47203 * 300.00135 * 13 12 10 31 31 H 1.08998 * 109.47190 * 60.00521 * 13 12 10 32 32 H 0.96996 * 120.00339 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2370 -1.1209 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1561 1.4716 8 1 1.0287 -2.9918 0.8547 9 6 1.6472 -2.4375 2.9476 10 6 0.3975 -1.6501 2.5489 11 1 0.3898 -0.5796 2.7541 12 7 -0.8997 -2.3283 2.6729 13 6 -1.9045 -1.4376 3.2690 14 6 -3.2191 -2.1661 3.3795 15 1 -3.3000 -3.1886 3.0411 16 6 -4.3185 -1.5273 3.9125 17 7 -5.4657 -2.1632 4.0094 18 14 -4.1788 0.2413 4.4971 19 1 -4.4992 1.1601 3.3753 20 1 -5.1320 0.4708 5.6125 21 1 -2.7943 0.4990 4.9681 22 1 -0.3633 0.0775 1.0248 23 1 -0.3634 0.8486 -0.5795 24 1 -0.3633 -0.9263 -0.4452 25 1 3.1721 -0.8749 -1.2678 26 1 1.6120 -1.8584 -1.2684 27 1 1.5069 -3.4587 3.3020 28 1 2.4618 -1.8847 3.4156 29 1 -1.2116 -2.6785 1.7796 30 1 -1.5745 -1.1302 4.2613 31 1 -2.0293 -0.5572 2.6387 32 1 -6.2393 -1.7137 4.3840 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716540923.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = 41.238593 kcal Electronic energy + Delta-G solvation = -12193.481045 eV Core-core repulsion = 10155.231368 eV Total energy + Delta-G solvation = -2038.249678 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.91546 -35.99293 -33.41762 -31.61787 -28.45000 -26.71225 -23.38068 -21.62586 -21.23835 -20.56303 -19.01392 -16.77984 -15.73385 -15.14506 -14.80012 -13.93931 -13.71492 -13.21999 -12.75834 -12.42234 -12.22516 -12.00440 -11.62765 -11.37871 -11.09220 -10.87691 -10.78923 -10.45191 -10.22765 -9.83250 -9.71040 -9.28267 -9.16002 -8.59971 -7.37783 -6.06690 -4.04854 3.27867 3.35589 3.38612 3.70958 4.21658 4.41392 4.61157 4.88509 4.93843 5.03287 5.26260 5.35766 5.40022 5.56112 5.57696 5.79689 5.83192 5.92278 6.00143 6.09758 6.16985 6.22959 6.37448 6.46584 6.51802 6.80533 7.00740 7.61089 7.91165 8.31079 8.63844 9.00986 9.55047 11.06603 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046904 B = 0.008523 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.817082 B = 3284.332795 C = 3501.983507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.150 4.150 3 H 0.098 0.902 4 C -0.176 4.176 5 C -0.117 4.117 6 H 0.101 0.899 7 C -0.141 4.141 8 H 0.103 0.897 9 C -0.169 4.169 10 C 0.038 3.962 11 H 0.091 0.909 12 N -0.649 5.649 13 C 0.167 3.833 14 C -0.517 4.517 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.266 1.266 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.337 0.663 30 H 0.027 0.973 31 H -0.019 1.019 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.123 4.277 -6.875 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 H 0.116 0.884 4 C -0.213 4.213 5 C -0.136 4.136 6 H 0.119 0.881 7 C -0.161 4.161 8 H 0.121 0.879 9 C -0.208 4.208 10 C -0.073 4.073 11 H 0.109 0.891 12 N -0.279 5.279 13 C 0.039 3.961 14 C -0.556 4.556 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.191 1.191 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.156 0.844 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.047 3.995 -6.205 15.867 hybrid contribution -0.169 1.520 -0.372 1.573 sum 13.877 5.515 -6.576 16.317 Atomic orbital electron populations 1.21410 0.92411 1.01692 1.02641 1.22362 0.95821 0.93939 1.04740 0.88369 1.23102 1.02205 1.01936 0.94025 1.21835 0.99696 0.98984 0.93061 0.88108 1.22068 1.02735 1.00003 0.91273 0.87863 1.23237 0.99711 1.02247 0.95587 1.22530 0.88373 0.95755 1.00690 0.89113 1.60271 1.01252 1.37652 1.28748 1.20047 0.90947 0.90972 0.94145 1.21057 0.91854 1.01199 1.41443 0.90308 1.24897 0.95154 0.97881 0.95339 1.69902 1.00938 1.37216 1.45832 0.86828 0.78351 0.85534 0.78836 1.20301 1.21108 1.19109 0.91503 0.92708 0.92392 0.89262 0.88814 0.88506 0.89585 0.84404 0.95466 1.00090 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.97 37.16 0.33 -1.37 16 2 C -0.15 -1.83 6.39 -90.62 -0.58 -2.41 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.18 -1.94 9.90 -26.73 -0.26 -2.21 16 5 C -0.12 -1.45 5.87 -90.62 -0.53 -1.98 16 6 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.14 -2.02 5.06 -90.62 -0.46 -2.47 16 8 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 9 C -0.17 -2.53 10.18 -26.73 -0.27 -2.81 16 10 C 0.04 0.65 4.27 -67.71 -0.29 0.36 16 11 H 0.09 1.61 7.05 -51.93 -0.37 1.24 16 12 N -0.65 -13.63 6.74 -107.99 -0.73 -14.36 16 13 C 0.17 4.08 4.36 -4.97 -0.02 4.06 16 14 C -0.52 -14.93 9.87 -34.44 -0.34 -15.27 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.71 27.47 -169.99 -4.67 17.05 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 22 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 27 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.34 6.85 8.68 -39.29 -0.34 6.51 16 30 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 31 H -0.02 -0.45 7.57 -51.93 -0.39 -0.84 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -29.87 265.01 -8.31 -38.18 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.16 Total: 4.34 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.52 Total: -22.16 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.05 Total: -41.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.87 -8.31 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716540923.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.421 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds