Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 115.55197 * 2 1 4 4 C 1.53003 * 117.49679 * 214.33273 * 2 1 3 5 5 C 1.53003 * 60.00198 * 252.48302 * 4 2 1 6 6 H 1.08996 * 117.50176 * 252.50773 * 5 4 2 7 7 C 1.53005 * 117.49571 * 107.48492 * 5 4 2 8 8 H 1.08997 * 115.54978 * 331.05775 * 7 5 4 9 9 C 1.52998 * 117.49658 * 116.72354 * 7 5 4 10 10 C 1.52997 * 117.49959 * 185.34590 * 7 5 4 11 11 H 1.08991 * 117.49855 * 145.01923 * 10 7 5 12 12 N 1.46903 * 117.49787 * 0.02562 * 10 7 5 13 13 C 1.46894 * 111.00175 * 159.02187 * 12 10 7 14 14 C 1.50700 * 109.47309 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00023 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00092 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46972 * 89.99958 * 18 16 14 20 20 H 1.48492 * 109.47320 * 209.99939 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00411 * 18 16 14 22 22 H 1.09002 * 109.47580 * 149.52579 * 1 2 3 23 23 H 1.09000 * 109.46869 * 269.52485 * 1 2 3 24 24 H 1.09001 * 109.47198 * 29.52225 * 1 2 3 25 25 H 1.08998 * 117.49971 * 359.97438 * 4 2 1 26 26 H 1.09002 * 117.50063 * 144.97101 * 4 2 1 27 27 H 1.08991 * 117.50169 * 214.97595 * 9 7 5 28 28 H 1.08998 * 117.49921 * 0.02562 * 9 7 5 29 29 H 1.00906 * 110.99598 * 35.06852 * 12 10 7 30 30 H 1.09000 * 109.47432 * 300.00311 * 13 12 10 31 31 H 1.09002 * 109.47257 * 59.99938 * 13 12 10 32 32 H 0.97007 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2369 -1.1210 0.7646 6 1 3.1721 -0.8752 1.2676 7 6 1.3597 -2.1565 1.4711 8 1 0.4699 -2.4699 0.9251 9 6 2.0618 -3.2035 2.3381 10 6 1.2620 -2.0772 2.9959 11 1 0.3077 -2.3382 3.4533 12 7 2.0172 -1.0123 3.6695 13 6 1.4663 -0.7392 5.0035 14 6 2.2653 0.3555 5.6625 15 1 3.0986 0.8039 5.1421 16 6 1.9323 0.7847 6.9297 17 7 2.6299 1.7398 7.5050 18 14 0.4904 0.0097 7.8296 19 1 0.9673 -1.1546 8.6185 20 1 -0.1189 1.0100 8.7424 21 1 -0.5234 -0.4426 6.8432 22 1 -0.3634 -0.8857 -0.5212 23 1 -0.3633 -0.0085 1.0276 24 1 -0.3634 0.8942 -0.5064 25 1 1.6111 -1.8583 -1.2686 26 1 3.1710 -0.8746 -1.2694 27 1 1.6337 -4.2055 2.3629 28 1 3.1485 -3.1544 2.4055 29 1 2.0386 -0.1739 3.1085 30 1 0.4268 -0.4250 4.9101 31 1 1.5195 -1.6430 5.6106 32 1 2.3954 2.0420 8.3965 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716540925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 40.345758 kcal Electronic energy + Delta-G solvation = -12111.567811 eV Core-core repulsion = 10073.279417 eV Total energy + Delta-G solvation = -2038.288394 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.79050 -36.03729 -33.41332 -31.56804 -28.39997 -26.70191 -23.54588 -21.50653 -21.14624 -20.65892 -18.63443 -16.74139 -15.93105 -15.19869 -14.61265 -13.68658 -13.65849 -13.19809 -12.99951 -12.55539 -12.30758 -11.96306 -11.57406 -11.39127 -11.02571 -10.84804 -10.62379 -10.44983 -10.38331 -9.83915 -9.63729 -9.27581 -9.00236 -8.58156 -7.36717 -6.05549 -4.03524 3.29483 3.36318 3.38818 3.70130 4.42104 4.43003 4.67264 4.89603 4.91884 5.18027 5.27765 5.39750 5.47800 5.50694 5.56821 5.82665 5.87574 5.90472 5.93415 6.09901 6.16022 6.24886 6.38245 6.46749 6.60122 6.81248 7.03592 7.62230 7.93629 8.35519 8.65716 9.02113 9.56345 11.07729 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046044 B = 0.008129 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.965696 B = 3443.489420 C = 3598.573585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.178 4.178 5 C -0.109 4.109 6 H 0.112 0.888 7 C -0.137 4.137 8 H 0.096 0.904 9 C -0.169 4.169 10 C 0.032 3.968 11 H 0.087 0.913 12 N -0.648 5.648 13 C 0.165 3.835 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.340 0.660 30 H -0.015 1.015 31 H 0.023 0.977 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -6.438 -13.596 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.172 4.172 3 H 0.121 0.879 4 C -0.215 4.215 5 C -0.128 4.128 6 H 0.130 0.870 7 C -0.157 4.157 8 H 0.114 0.886 9 C -0.208 4.208 10 C -0.080 4.080 11 H 0.105 0.895 12 N -0.279 5.279 13 C 0.038 3.962 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.003 0.997 31 H 0.041 0.959 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.954 -6.728 -13.168 15.307 hybrid contribution -1.486 0.076 0.397 1.540 sum -5.440 -6.652 -12.771 15.393 Atomic orbital electron populations 1.21310 0.93135 1.01145 1.02008 1.22341 0.95340 0.94508 1.05033 0.87903 1.23071 1.02296 1.01597 0.94512 1.21738 1.00484 0.98064 0.92484 0.86974 1.21968 1.00282 1.00282 0.93118 0.88584 1.23160 1.00201 0.93642 1.03756 1.22476 0.96574 0.97651 0.91281 0.89543 1.60215 1.52685 1.10458 1.04546 1.20039 0.93255 0.96654 0.86293 1.21053 1.15683 1.17842 1.00874 0.90330 1.24899 0.96423 0.94797 0.97188 1.69903 1.40088 1.28740 1.15209 0.86813 0.83341 0.79332 0.79968 1.20128 1.21205 1.19273 0.92957 0.91982 0.92640 0.89232 0.89182 0.89582 0.88435 0.84013 0.99733 0.95905 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.07 37.15 0.34 -1.06 16 2 C -0.15 -1.94 6.41 -90.62 -0.58 -2.52 16 3 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.18 -2.06 9.90 -26.73 -0.26 -2.32 16 5 C -0.11 -1.52 4.69 -90.61 -0.42 -1.94 16 6 H 0.11 1.73 7.89 -51.93 -0.41 1.32 16 7 C -0.14 -1.97 5.01 -90.62 -0.45 -2.42 16 8 H 0.10 1.25 7.55 -51.93 -0.39 0.86 16 9 C -0.17 -2.54 10.18 -26.73 -0.27 -2.81 16 10 C 0.03 0.55 6.21 -67.71 -0.42 0.13 16 11 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 12 N -0.65 -13.78 6.42 -108.00 -0.69 -14.48 16 13 C 0.17 4.11 4.37 -4.98 -0.02 4.09 16 14 C -0.52 -15.01 9.87 -34.44 -0.34 -15.35 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 18 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 23 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.34 7.09 7.59 -39.29 -0.30 6.79 16 30 H -0.01 -0.37 7.20 -51.93 -0.37 -0.75 16 31 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 266.29 15.07 4.01 4.01 Total: -1.00 -30.12 266.29 -8.33 -38.45 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.21 Total: 4.29 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.54 Total: -22.28 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.08 Total: -41.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.12 -8.33 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716540925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.793 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds