Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 115.55197 * 2 1 4 4 C 1.53003 * 117.49679 * 214.33273 * 2 1 3 5 5 C 1.53003 * 60.00198 * 252.48302 * 4 2 1 6 6 H 1.08996 * 117.50176 * 252.50773 * 5 4 2 7 7 C 1.53005 * 117.49571 * 107.48492 * 5 4 2 8 8 H 1.08997 * 115.54978 * 331.05775 * 7 5 4 9 9 C 1.52998 * 117.49658 * 116.72354 * 7 5 4 10 10 C 1.52997 * 117.49959 * 185.34590 * 7 5 4 11 11 H 1.08991 * 117.49855 * 145.01923 * 10 7 5 12 12 N 1.46903 * 117.49787 * 0.02562 * 10 7 5 13 13 C 1.46894 * 111.00175 * 159.02187 * 12 10 7 14 14 C 1.50700 * 109.47309 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00023 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00092 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46972 * 89.99958 * 18 16 14 20 20 H 1.48492 * 109.47320 * 209.99939 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00411 * 18 16 14 22 22 H 1.09002 * 109.47580 * 149.52579 * 1 2 3 23 23 H 1.09000 * 109.46869 * 269.52485 * 1 2 3 24 24 H 1.09001 * 109.47198 * 29.52225 * 1 2 3 25 25 H 1.08998 * 117.49971 * 359.97438 * 4 2 1 26 26 H 1.09002 * 117.50063 * 144.97101 * 4 2 1 27 27 H 1.08991 * 117.50169 * 214.97595 * 9 7 5 28 28 H 1.08998 * 117.49921 * 0.02562 * 9 7 5 29 29 H 1.00906 * 110.99598 * 35.06852 * 12 10 7 30 30 H 1.09000 * 109.47432 * 300.00311 * 13 12 10 31 31 H 1.09002 * 109.47257 * 59.99938 * 13 12 10 32 32 H 0.97007 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2369 -1.1210 0.7646 6 1 3.1721 -0.8752 1.2676 7 6 1.3597 -2.1565 1.4711 8 1 0.4699 -2.4699 0.9251 9 6 2.0618 -3.2035 2.3381 10 6 1.2620 -2.0772 2.9959 11 1 0.3077 -2.3382 3.4533 12 7 2.0172 -1.0123 3.6695 13 6 1.4663 -0.7392 5.0035 14 6 2.2653 0.3555 5.6625 15 1 3.0986 0.8039 5.1421 16 6 1.9323 0.7847 6.9297 17 7 2.6299 1.7398 7.5050 18 14 0.4904 0.0097 7.8296 19 1 0.9673 -1.1546 8.6185 20 1 -0.1189 1.0100 8.7424 21 1 -0.5234 -0.4426 6.8432 22 1 -0.3634 -0.8857 -0.5212 23 1 -0.3633 -0.0085 1.0276 24 1 -0.3634 0.8942 -0.5064 25 1 1.6111 -1.8583 -1.2686 26 1 3.1710 -0.8746 -1.2694 27 1 1.6337 -4.2055 2.3629 28 1 3.1485 -3.1544 2.4055 29 1 2.0386 -0.1739 3.1085 30 1 0.4268 -0.4250 4.9101 31 1 1.5195 -1.6430 5.6106 32 1 2.3954 2.0420 8.3965 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716540925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 21.181073 kcal Electronic energy + Delta-G solvation = -12112.398854 eV Core-core repulsion = 10073.279417 eV Total energy + Delta-G solvation = -2039.119437 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.95488 -37.33088 -35.33239 -33.51977 -29.36035 -28.72087 -24.64873 -23.49115 -22.24999 -21.94104 -19.87918 -18.82644 -17.22452 -16.52345 -16.39039 -15.50150 -14.97916 -14.79669 -14.27528 -14.04118 -13.72122 -13.27027 -13.06351 -12.72756 -12.46310 -12.31420 -12.02502 -11.99690 -11.70777 -11.66804 -11.33918 -10.84230 -10.70957 -10.15383 -9.00043 -8.32433 -6.37450 1.33622 1.35265 1.46491 2.32357 2.60397 3.01428 3.27163 3.39800 3.66520 3.89219 4.13282 4.25574 4.40218 4.42677 4.46494 4.55234 4.72840 4.89175 4.93793 4.97499 4.98547 5.03446 5.09783 5.23492 5.32757 5.45498 5.47425 5.50299 5.98345 6.54032 6.64830 6.74465 7.27735 8.84368 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046044 B = 0.008129 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.965696 B = 3443.489420 C = 3598.573585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.160 4.160 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.135 4.135 6 H 0.088 0.912 7 C -0.110 4.110 8 H 0.119 0.881 9 C -0.160 4.160 10 C -0.002 4.002 11 H 0.090 0.910 12 N -0.657 5.657 13 C 0.178 3.822 14 C -0.531 4.531 15 H 0.035 0.965 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.251 1.251 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.337 0.663 30 H -0.013 1.013 31 H 0.023 0.977 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -8.127 -14.795 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 H 0.116 0.884 4 C -0.190 4.190 5 C -0.154 4.154 6 H 0.106 0.894 7 C -0.129 4.129 8 H 0.137 0.863 9 C -0.198 4.198 10 C -0.113 4.113 11 H 0.108 0.892 12 N -0.288 5.288 13 C 0.050 3.950 14 C -0.569 4.569 15 H 0.053 0.947 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.175 1.175 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.005 0.995 31 H 0.041 0.959 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.743 -8.433 -14.395 17.644 hybrid contribution -0.824 0.650 0.690 1.256 sum -6.566 -7.783 -13.705 17.074 Atomic orbital electron populations 1.21306 0.92270 1.02529 1.01284 1.22433 0.96066 0.94382 1.04907 0.88380 1.23145 1.02682 1.00716 0.92423 1.21681 1.00007 0.99381 0.94286 0.89401 1.22008 1.00610 0.99275 0.90961 0.86271 1.23220 0.99472 0.94460 1.02677 1.22556 0.97119 0.97894 0.93729 0.89238 1.60109 1.53780 1.11292 1.03595 1.19756 0.92488 0.94833 0.87946 1.21327 1.15137 1.19102 1.01359 0.94653 1.25894 0.99725 0.95208 0.98099 1.70055 1.42275 1.30435 1.15937 0.85625 0.79439 0.78577 0.78730 1.19022 1.20378 1.17491 0.91409 0.93674 0.91528 0.87490 0.88164 0.86977 0.89671 0.84398 0.99509 0.95882 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.07 71.98 0.65 -1.83 16 2 C -0.16 -3.77 6.41 -10.79 -0.07 -3.84 16 3 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.15 -3.11 9.90 30.60 0.30 -2.81 16 5 C -0.14 -3.59 4.69 -10.79 -0.05 -3.64 16 6 H 0.09 2.76 7.89 -2.39 -0.02 2.74 16 7 C -0.11 -2.90 5.01 -10.79 -0.05 -2.95 16 8 H 0.12 2.64 7.55 -2.39 -0.02 2.62 16 9 C -0.16 -4.49 10.18 30.59 0.31 -4.18 16 10 C 0.00 -0.08 6.21 44.91 0.28 0.20 16 11 H 0.09 2.97 7.92 -2.39 -0.02 2.95 16 12 N -0.66 -28.29 6.42 -495.60 -3.18 -31.47 16 13 C 0.18 8.88 4.37 85.56 0.37 9.26 16 14 C -0.53 -31.81 9.87 25.60 0.25 -31.56 16 15 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 16 C 0.01 0.50 5.47 84.65 0.46 0.96 16 17 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 18 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 23 H 0.04 1.11 8.03 -2.39 -0.02 1.09 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.11 1.85 8.03 -2.39 -0.02 1.83 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.34 14.50 7.59 -89.69 -0.68 13.82 16 30 H -0.01 -0.62 7.20 -2.39 -0.02 -0.64 16 31 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 32 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -65.81 266.29 1.81 -64.00 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.35 Total: 20.99 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 2.46 Total: -40.39 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.88 Total: -91.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -65.81 1.81 -64.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716540925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.180 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds