Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 115.56343 * 2 1 4 4 C 1.53076 * 117.51312 * 214.29946 * 2 1 3 5 5 C 1.52995 * 117.49932 * 145.69178 * 2 1 3 6 6 H 1.09003 * 117.50329 * 215.00428 * 5 2 1 7 7 C 1.53005 * 117.49944 * 359.97438 * 5 2 1 8 8 H 1.09006 * 115.54597 * 34.24375 * 7 5 2 9 9 C 1.53072 * 117.51565 * 248.52137 * 7 5 2 10 10 C 1.52997 * 117.50099 * 179.91096 * 7 5 2 11 11 H 1.09000 * 117.49842 * 215.00359 * 10 7 5 12 12 C 1.53001 * 117.50037 * 0.02562 * 10 7 5 13 13 N 1.46490 * 109.47264 * 184.90796 * 12 10 7 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47055 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46653 * 299.99639 * 18 16 14 21 21 H 1.48495 * 109.47483 * 60.00002 * 18 16 14 22 22 H 1.08996 * 109.47511 * 274.31274 * 1 2 3 23 23 H 1.09009 * 109.47281 * 34.31195 * 1 2 3 24 24 H 1.08997 * 109.47354 * 154.31049 * 1 2 3 25 25 H 1.09003 * 117.49541 * 145.03542 * 4 2 1 26 26 H 1.09004 * 117.52977 * 359.97438 * 4 2 1 27 27 H 1.09004 * 117.49249 * 145.02931 * 9 7 5 28 28 H 1.09002 * 117.51208 * 0.02562 * 9 7 5 29 29 H 1.09003 * 109.46836 * 64.90503 * 12 10 7 30 30 H 1.08999 * 109.47071 * 304.91542 * 12 10 7 31 31 H 0.97000 * 120.00577 * 0.02562 * 13 12 10 32 32 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1215 -0.7651 5 6 2.2364 -1.1210 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3587 -2.1559 1.4718 8 1 0.4229 -2.4006 0.9693 9 6 1.3608 -2.1576 3.0026 10 6 2.0652 -3.2781 2.2350 11 1 1.5941 -4.2611 2.2346 12 6 3.5952 -3.2793 2.2335 13 7 4.0833 -4.4835 2.9099 14 6 5.4295 -4.7029 3.0307 15 1 6.1315 -3.9879 2.6277 16 6 5.8921 -5.8442 3.6712 17 7 5.0367 -6.7159 4.1620 18 14 7.7287 -6.1431 3.8366 19 1 7.9593 -7.4225 4.5543 20 1 8.3418 -6.2162 2.4860 21 1 8.3448 -5.0285 4.6003 22 1 -0.3634 0.0773 1.0247 23 1 -0.3634 0.8489 -0.5793 24 1 -0.3634 -0.9260 -0.4455 25 1 3.1723 -0.8756 -1.2680 26 1 1.6125 -1.8598 -1.2681 27 1 0.4261 -2.4031 3.5068 28 1 1.9871 -1.4210 3.5060 29 1 3.9597 -2.3954 2.7570 30 1 3.9574 -3.2677 1.2055 31 1 3.4529 -5.1259 3.2716 32 1 4.0830 -6.5605 4.0764 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716602732.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = 47.549776 kcal Electronic energy + Delta-G solvation = -11994.099264 eV Core-core repulsion = 9956.123260 eV Total energy + Delta-G solvation = -2037.976004 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90289 -36.10120 -34.11469 -30.59531 -28.53361 -25.66364 -23.48794 -22.70436 -21.50061 -20.43125 -18.44350 -17.21232 -15.93343 -15.26001 -14.29584 -13.74654 -13.59767 -13.27137 -13.01925 -12.63284 -12.53138 -12.41307 -11.46617 -11.03678 -11.00775 -10.71630 -10.60768 -10.44100 -10.10469 -9.94486 -9.53199 -9.26873 -8.97796 -8.76505 -6.92831 -6.05602 -3.03897 3.54503 3.58644 3.62386 3.76137 4.30910 4.62204 4.71425 4.81418 5.01943 5.14858 5.25827 5.40286 5.44922 5.47163 5.68113 5.76205 5.79130 5.86690 5.89231 5.97694 6.07815 6.21114 6.25927 6.30382 6.36944 6.47948 6.79000 6.86340 7.85886 8.81420 9.30157 10.16445 10.32425 11.43470 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067600 B = 0.006761 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.100362 B = 4140.330959 C = 4399.723929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.157 4.157 3 H 0.100 0.900 4 C -0.173 4.173 5 C -0.112 4.112 6 H 0.106 0.894 7 C -0.121 4.121 8 H 0.099 0.901 9 C -0.172 4.172 10 C -0.143 4.143 11 H 0.101 0.899 12 C 0.191 3.809 13 N -0.743 5.743 14 C -0.330 4.330 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.945 5.945 18 Si 1.081 2.919 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.295 1.295 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.367 0.633 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 11.996 -7.247 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.175 4.175 3 H 0.118 0.882 4 C -0.210 4.210 5 C -0.130 4.130 6 H 0.124 0.876 7 C -0.139 4.139 8 H 0.117 0.883 9 C -0.209 4.209 10 C -0.162 4.162 11 H 0.119 0.881 12 C 0.064 3.936 13 N -0.389 5.389 14 C -0.461 4.461 15 H 0.081 0.919 16 C -0.244 4.244 17 N -0.591 5.591 18 Si 0.912 3.088 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.223 1.223 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.200 0.800 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.028 11.107 -6.750 14.776 hybrid contribution -1.334 0.921 -0.517 1.702 sum -8.362 12.029 -7.267 16.353 Atomic orbital electron populations 1.21308 0.93124 1.01394 1.01724 1.22355 0.95291 0.94282 1.05608 0.88209 1.23076 1.02345 1.01125 0.94464 1.21787 0.99938 0.97937 0.93322 0.87627 1.21738 0.99652 0.99114 0.93442 0.88256 1.23058 1.02344 1.02341 0.93169 1.22658 0.96625 0.93833 1.03040 0.88062 1.20128 0.87926 0.90172 0.95394 1.42383 1.04664 1.22636 1.69198 1.20046 0.83393 1.07403 1.35286 0.91856 1.25787 1.06952 0.93376 0.98309 1.70874 1.02459 1.37198 1.48605 0.83232 0.73839 0.75899 0.75858 1.21009 1.22287 1.22296 0.92150 0.92719 0.92680 0.88982 0.88910 0.89324 0.88887 0.96364 0.95816 0.80025 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.04 37.15 0.34 -0.83 16 2 C -0.16 -1.77 6.41 -90.59 -0.58 -2.35 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.17 -2.10 9.90 -26.69 -0.26 -2.37 16 5 C -0.11 -1.52 5.10 -90.62 -0.46 -1.98 16 6 H 0.11 1.56 7.35 -51.93 -0.38 1.17 16 7 C -0.12 -1.73 5.18 -90.58 -0.47 -2.20 16 8 H 0.10 1.30 7.19 -51.93 -0.37 0.93 16 9 C -0.17 -2.58 9.90 -26.69 -0.26 -2.85 16 10 C -0.14 -2.53 5.85 -90.62 -0.53 -3.06 16 11 H 0.10 1.83 8.04 -51.93 -0.42 1.41 16 12 C 0.19 4.16 5.34 -4.05 -0.02 4.13 16 13 N -0.74 -19.92 5.60 -59.91 -0.34 -20.26 16 14 C -0.33 -9.78 9.99 -15.06 -0.15 -9.93 16 15 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 17 N -0.95 -30.15 13.70 55.49 0.76 -29.39 16 18 Si 1.08 26.61 29.92 -169.99 -5.09 21.53 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 24 H 0.05 0.54 7.40 -51.93 -0.38 0.15 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 29 H 0.02 0.41 7.62 -51.93 -0.40 0.01 16 30 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.37 9.98 6.43 -40.82 -0.26 9.72 16 32 H 0.25 8.01 6.77 -40.82 -0.28 7.73 16 LS Contribution 266.20 15.07 4.01 4.01 Total: -1.00 -31.97 266.20 -8.22 -40.19 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.06 Total: 6.85 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.50 Total: -22.93 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.42 Total: -49.65 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -5.09 Total: 21.53 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.97 -8.22 -40.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716602732.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.739 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds