Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 115.56343 * 2 1 4 4 C 1.53076 * 117.51312 * 214.29946 * 2 1 3 5 5 C 1.52995 * 117.49932 * 145.69178 * 2 1 3 6 6 H 1.09003 * 117.50329 * 215.00428 * 5 2 1 7 7 C 1.53005 * 117.49944 * 359.97438 * 5 2 1 8 8 H 1.09006 * 115.54597 * 34.24375 * 7 5 2 9 9 C 1.53072 * 117.51565 * 248.52137 * 7 5 2 10 10 C 1.52997 * 117.50099 * 179.91096 * 7 5 2 11 11 H 1.09000 * 117.49842 * 215.00359 * 10 7 5 12 12 C 1.53001 * 117.50037 * 0.02562 * 10 7 5 13 13 N 1.46490 * 109.47264 * 184.90796 * 12 10 7 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47055 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46653 * 299.99639 * 18 16 14 21 21 H 1.48495 * 109.47483 * 60.00002 * 18 16 14 22 22 H 1.08996 * 109.47511 * 274.31274 * 1 2 3 23 23 H 1.09009 * 109.47281 * 34.31195 * 1 2 3 24 24 H 1.08997 * 109.47354 * 154.31049 * 1 2 3 25 25 H 1.09003 * 117.49541 * 145.03542 * 4 2 1 26 26 H 1.09004 * 117.52977 * 359.97438 * 4 2 1 27 27 H 1.09004 * 117.49249 * 145.02931 * 9 7 5 28 28 H 1.09002 * 117.51208 * 0.02562 * 9 7 5 29 29 H 1.09003 * 109.46836 * 64.90503 * 12 10 7 30 30 H 1.08999 * 109.47071 * 304.91542 * 12 10 7 31 31 H 0.97000 * 120.00577 * 0.02562 * 13 12 10 32 32 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1215 -0.7651 5 6 2.2364 -1.1210 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3587 -2.1559 1.4718 8 1 0.4229 -2.4006 0.9693 9 6 1.3608 -2.1576 3.0026 10 6 2.0652 -3.2781 2.2350 11 1 1.5941 -4.2611 2.2346 12 6 3.5952 -3.2793 2.2335 13 7 4.0833 -4.4835 2.9099 14 6 5.4295 -4.7029 3.0307 15 1 6.1315 -3.9879 2.6277 16 6 5.8921 -5.8442 3.6712 17 7 5.0367 -6.7159 4.1620 18 14 7.7287 -6.1431 3.8366 19 1 7.9593 -7.4225 4.5543 20 1 8.3418 -6.2162 2.4860 21 1 8.3448 -5.0285 4.6003 22 1 -0.3634 0.0773 1.0247 23 1 -0.3634 0.8489 -0.5793 24 1 -0.3634 -0.9260 -0.4455 25 1 3.1723 -0.8756 -1.2680 26 1 1.6125 -1.8598 -1.2681 27 1 0.4261 -2.4031 3.5068 28 1 1.9871 -1.4210 3.5060 29 1 3.9597 -2.3954 2.7570 30 1 3.9574 -3.2677 1.2055 31 1 3.4529 -5.1259 3.2716 32 1 4.0830 -6.5605 4.0764 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716602732.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = 28.745155 kcal Electronic energy + Delta-G solvation = -11994.914694 eV Core-core repulsion = 9956.123260 eV Total energy + Delta-G solvation = -2038.791434 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.06624 -37.48178 -36.01456 -32.69579 -29.35134 -27.61229 -24.84274 -24.60111 -22.61536 -21.64385 -19.74325 -19.29317 -17.13094 -16.80049 -15.93856 -15.65383 -15.04098 -14.95686 -14.31714 -13.91640 -13.73182 -13.29309 -12.82557 -12.63759 -12.39672 -12.29986 -12.05802 -11.87202 -11.79389 -11.36821 -11.30239 -10.93837 -10.55903 -10.19903 -9.14203 -8.44954 -5.38161 1.56870 1.67703 1.84537 2.51362 2.70324 3.18382 3.36857 3.52626 3.63409 3.89223 3.93277 4.13099 4.28385 4.33970 4.36494 4.47263 4.51809 4.82929 4.87394 4.92563 4.94950 4.99481 5.02970 5.21009 5.22037 5.25785 5.36010 5.47088 5.53895 6.45178 7.05907 7.96243 8.08240 9.07406 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067600 B = 0.006761 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.100362 B = 4140.330959 C = 4399.723929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.136 4.136 3 H 0.111 0.889 4 C -0.175 4.175 5 C -0.140 4.140 6 H 0.087 0.913 7 C -0.091 4.091 8 H 0.119 0.881 9 C -0.162 4.162 10 C -0.173 4.173 11 H 0.094 0.906 12 C 0.197 3.803 13 N -0.757 5.757 14 C -0.342 4.342 15 H 0.064 0.936 16 C -0.103 4.103 17 N -0.973 5.973 18 Si 1.131 2.869 19 H -0.289 1.289 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.361 0.639 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 13.338 -8.011 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 H 0.129 0.871 4 C -0.212 4.212 5 C -0.158 4.158 6 H 0.106 0.894 7 C -0.110 4.110 8 H 0.137 0.863 9 C -0.199 4.199 10 C -0.191 4.191 11 H 0.112 0.888 12 C 0.071 3.929 13 N -0.402 5.402 14 C -0.473 4.473 15 H 0.082 0.918 16 C -0.294 4.294 17 N -0.621 5.621 18 Si 0.955 3.045 19 H -0.215 1.215 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.193 0.807 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.465 12.495 -7.540 16.392 hybrid contribution -1.242 0.572 -0.319 1.404 sum -8.707 13.067 -7.859 17.559 Atomic orbital electron populations 1.21359 0.91742 1.02341 1.02231 1.22469 0.96272 0.93942 1.02741 0.87132 1.23162 1.02924 1.01886 0.93224 1.21769 0.99969 0.99812 0.94251 0.89432 1.21793 0.99396 0.96589 0.93185 0.86294 1.23133 1.02413 1.00238 0.94119 1.22435 0.93978 0.94978 1.07727 0.88810 1.20130 0.90939 0.87892 0.93943 1.42623 1.03899 1.24051 1.69616 1.20425 0.84816 1.07396 1.34656 0.91754 1.27355 1.10820 0.93269 0.97980 1.70991 1.02192 1.38378 1.50507 0.82604 0.69031 0.76022 0.76861 1.21509 1.20243 1.20234 0.91966 0.90980 0.92495 0.88684 0.88465 0.87299 0.89311 0.96858 0.96663 0.80742 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.04 71.98 0.65 -1.31 16 2 C -0.14 -2.71 6.41 -10.77 -0.07 -2.78 16 3 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.18 -3.94 9.90 30.62 0.30 -3.63 16 5 C -0.14 -3.61 5.10 -10.79 -0.06 -3.67 16 6 H 0.09 2.57 7.35 -2.39 -0.02 2.55 16 7 C -0.09 -2.46 5.18 -10.77 -0.06 -2.52 16 8 H 0.12 2.78 7.19 -2.38 -0.02 2.76 16 9 C -0.16 -4.65 9.90 30.62 0.30 -4.34 16 10 C -0.17 -6.08 5.85 -10.79 -0.06 -6.14 16 11 H 0.09 3.43 8.04 -2.39 -0.02 3.41 16 12 C 0.20 8.73 5.34 86.38 0.46 9.19 16 13 N -0.76 -41.50 5.60 -343.47 -1.92 -43.42 16 14 C -0.34 -20.45 9.99 84.03 0.84 -19.61 16 15 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 16 C -0.10 -6.24 5.50 84.86 0.47 -5.77 16 17 N -0.97 -62.98 13.70 21.65 0.30 -62.69 16 18 Si 1.13 53.31 29.92 68.60 2.05 55.36 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.06 0.92 7.40 -2.39 -0.02 0.90 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.10 2.10 8.05 -2.38 -0.02 2.08 16 27 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 28 H 0.09 2.62 8.03 -2.39 -0.02 2.60 16 29 H 0.01 0.61 7.62 -2.39 -0.02 0.59 16 30 H 0.02 0.70 8.03 -2.39 -0.02 0.69 16 31 H 0.36 20.27 6.43 -92.71 -0.60 19.68 16 32 H 0.24 15.74 6.77 -92.71 -0.63 15.11 16 Total: -1.00 -68.27 266.20 3.84 -64.43 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.63 Total: 26.90 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 2.78 Total: -40.58 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -1.63 Total: -106.11 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -68.27 3.84 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716602732.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.175 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds