Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.56864 * 2 1 4 4 C 1.53007 * 117.49617 * 214.30142 * 2 1 3 5 5 C 1.53001 * 59.99929 * 252.51758 * 4 2 1 6 6 H 1.09001 * 117.51540 * 252.51770 * 5 4 2 7 7 C 1.53002 * 117.49663 * 107.49427 * 5 4 2 8 8 H 1.08999 * 115.54890 * 261.41642 * 7 5 4 9 9 C 1.53002 * 117.49808 * 47.12887 * 7 5 4 10 10 C 1.53005 * 117.49771 * 115.75246 * 7 5 4 11 11 H 1.08995 * 117.49905 * 144.99483 * 10 7 5 12 12 C 1.53002 * 117.49977 * 359.97438 * 10 7 5 13 13 N 1.46498 * 109.47126 * 176.33014 * 12 10 7 14 14 C 1.36936 * 120.00191 * 180.27688 * 13 12 10 15 15 H 1.08000 * 119.99749 * 359.72173 * 14 13 12 16 16 C 1.38807 * 120.00072 * 179.72431 * 14 13 12 17 17 N 1.31622 * 120.00214 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99991 * 18 16 14 20 20 H 1.48504 * 109.47083 * 210.00037 * 18 16 14 21 21 H 1.48501 * 109.47173 * 329.99780 * 18 16 14 22 22 H 1.09000 * 109.47628 * 279.43331 * 1 2 3 23 23 H 1.09007 * 109.46886 * 39.43128 * 1 2 3 24 24 H 1.08998 * 109.47583 * 159.42447 * 1 2 3 25 25 H 1.08999 * 117.49446 * 145.02659 * 4 2 1 26 26 H 1.08996 * 117.49608 * 0.02562 * 4 2 1 27 27 H 1.08996 * 117.50193 * 0.02562 * 9 7 5 28 28 H 1.09000 * 117.49191 * 214.97750 * 9 7 5 29 29 H 1.08999 * 109.46882 * 56.33140 * 12 10 7 30 30 H 1.08996 * 109.46904 * 296.33042 * 12 10 7 31 31 H 0.97002 * 119.99717 * 0.02562 * 13 12 10 32 32 H 0.96996 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1212 -0.7649 5 6 2.2363 -1.1210 0.7651 6 1 3.1712 -0.8751 1.2688 7 6 1.3586 -2.1561 1.4716 8 1 0.3910 -1.7936 1.8187 9 6 1.4363 -3.6026 0.9789 10 6 2.0617 -3.2169 2.3210 11 1 1.5567 -3.5522 3.2268 12 6 3.5888 -3.1616 2.3985 13 7 4.0687 -4.1943 3.3201 14 6 5.4106 -4.3323 3.5552 15 1 6.1155 -3.6827 3.0576 16 6 5.8649 -5.3070 4.4329 17 7 5.0059 -6.0989 5.0389 18 14 7.6956 -5.4956 4.7529 19 1 8.0895 -4.6345 5.8967 20 1 7.9985 -6.9137 5.0735 21 1 8.4542 -5.0889 3.5428 22 1 -0.3634 0.1684 1.0137 23 1 -0.3633 0.7938 -0.6528 24 1 -0.3634 -0.9621 -0.3611 25 1 3.1715 -0.8754 -1.2681 26 1 1.6111 -1.8584 -1.2683 27 1 2.1131 -3.8168 0.1518 28 1 0.5197 -4.1919 1.0017 29 1 3.8990 -2.1807 2.7584 30 1 4.0093 -3.3349 1.4079 31 1 3.4355 -4.7779 3.7667 32 1 5.3233 -6.7798 5.6525 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716602734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 48.063118 kcal Electronic energy + Delta-G solvation = -11978.828448 eV Core-core repulsion = 9940.874704 eV Total energy + Delta-G solvation = -2037.953744 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93169 -35.89052 -33.76530 -30.69886 -28.47069 -25.96797 -23.88507 -22.59207 -20.88305 -20.49247 -18.33355 -16.95160 -15.73478 -15.38473 -14.37406 -13.99936 -13.33725 -13.05917 -12.99574 -12.56062 -12.32266 -12.21741 -11.43230 -11.07427 -10.85673 -10.81315 -10.70171 -10.33405 -10.02663 -9.98579 -9.68748 -9.37964 -9.24864 -8.76365 -6.84825 -5.71410 -2.99434 3.46892 3.51510 3.53595 3.78385 4.17407 4.64157 4.78253 4.84672 5.04172 5.24758 5.27799 5.37055 5.49946 5.64090 5.73726 5.80156 5.84602 5.94974 5.99854 6.00829 6.18738 6.30972 6.36898 6.40220 6.45140 6.53005 6.84441 6.97615 7.74356 8.48054 9.58752 10.18650 10.53476 11.51841 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.070597 B = 0.006664 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.522008 B = 4200.583835 C = 4422.152906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.157 4.157 3 H 0.099 0.901 4 C -0.174 4.174 5 C -0.114 4.114 6 H 0.109 0.891 7 C -0.126 4.126 8 H 0.101 0.899 9 C -0.173 4.173 10 C -0.139 4.139 11 H 0.103 0.897 12 C 0.185 3.815 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.384 0.616 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 9.810 -9.631 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 H 0.117 0.883 4 C -0.211 4.211 5 C -0.132 4.132 6 H 0.127 0.873 7 C -0.144 4.144 8 H 0.119 0.881 9 C -0.210 4.210 10 C -0.157 4.157 11 H 0.121 0.879 12 C 0.057 3.943 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.217 0.783 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.301 9.823 -9.650 16.078 hybrid contribution 0.824 -0.373 0.393 0.986 sum -7.477 9.450 -9.257 15.195 Atomic orbital electron populations 1.21304 0.93202 1.01632 1.01491 1.22337 0.95249 0.94273 1.05606 0.88285 1.23089 1.02181 1.01303 0.94510 1.21812 1.00276 0.98081 0.93041 0.87315 1.21721 0.99559 0.89316 1.03824 0.88062 1.23071 1.02581 0.96518 0.98794 1.22638 0.96978 1.01515 0.94600 0.87900 1.20186 0.88208 0.92394 0.93471 1.42371 1.05120 1.38406 1.51671 1.19246 0.83771 1.13377 1.20503 0.91243 1.24735 0.97648 0.98725 1.00001 1.69666 1.32593 1.23087 1.33012 0.86183 0.85129 0.76911 0.77953 1.21736 1.21770 1.20783 0.92329 0.92724 0.92427 0.89192 0.88828 0.88852 0.89517 0.96138 0.96196 0.78272 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.91 37.16 0.33 -0.84 16 2 C -0.16 -1.75 6.41 -90.62 -0.58 -2.33 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.17 -2.06 9.52 -26.73 -0.25 -2.32 16 5 C -0.11 -1.54 5.35 -90.62 -0.48 -2.02 16 6 H 0.11 1.60 6.93 -51.93 -0.36 1.24 16 7 C -0.13 -1.79 5.27 -90.61 -0.48 -2.27 16 8 H 0.10 1.32 7.19 -51.93 -0.37 0.95 16 9 C -0.17 -2.60 9.52 -26.73 -0.25 -2.85 16 10 C -0.14 -2.45 5.84 -90.61 -0.53 -2.98 16 11 H 0.10 1.87 8.06 -51.93 -0.42 1.45 16 12 C 0.18 3.96 5.44 -4.04 -0.02 3.93 16 13 N -0.73 -19.51 5.60 -59.91 -0.34 -19.84 16 14 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 18 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.08 7.98 -51.93 -0.41 0.67 16 27 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.02 0.45 7.43 -51.93 -0.39 0.06 16 30 H 0.02 0.44 7.88 -51.93 -0.41 0.03 16 31 H 0.38 10.70 7.61 -40.82 -0.31 10.39 16 32 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 266.70 15.07 4.02 4.02 Total: -1.00 -30.69 266.70 -8.27 -38.96 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.14 Total: 6.60 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.52 Total: -19.29 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.39 Total: -48.16 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.69 -8.27 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716602734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.020 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds