Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.56864 * 2 1 4 4 C 1.53007 * 117.49617 * 214.30142 * 2 1 3 5 5 C 1.53001 * 59.99929 * 252.51758 * 4 2 1 6 6 H 1.09001 * 117.51540 * 252.51770 * 5 4 2 7 7 C 1.53002 * 117.49663 * 107.49427 * 5 4 2 8 8 H 1.08999 * 115.54890 * 261.41642 * 7 5 4 9 9 C 1.53002 * 117.49808 * 47.12887 * 7 5 4 10 10 C 1.53005 * 117.49771 * 115.75246 * 7 5 4 11 11 H 1.08995 * 117.49905 * 144.99483 * 10 7 5 12 12 C 1.53002 * 117.49977 * 359.97438 * 10 7 5 13 13 N 1.46498 * 109.47126 * 176.33014 * 12 10 7 14 14 C 1.36936 * 120.00191 * 180.27688 * 13 12 10 15 15 H 1.08000 * 119.99749 * 359.72173 * 14 13 12 16 16 C 1.38807 * 120.00072 * 179.72431 * 14 13 12 17 17 N 1.31622 * 120.00214 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99991 * 18 16 14 20 20 H 1.48504 * 109.47083 * 210.00037 * 18 16 14 21 21 H 1.48501 * 109.47173 * 329.99780 * 18 16 14 22 22 H 1.09000 * 109.47628 * 279.43331 * 1 2 3 23 23 H 1.09007 * 109.46886 * 39.43128 * 1 2 3 24 24 H 1.08998 * 109.47583 * 159.42447 * 1 2 3 25 25 H 1.08999 * 117.49446 * 145.02659 * 4 2 1 26 26 H 1.08996 * 117.49608 * 0.02562 * 4 2 1 27 27 H 1.08996 * 117.50193 * 0.02562 * 9 7 5 28 28 H 1.09000 * 117.49191 * 214.97750 * 9 7 5 29 29 H 1.08999 * 109.46882 * 56.33140 * 12 10 7 30 30 H 1.08996 * 109.46904 * 296.33042 * 12 10 7 31 31 H 0.97002 * 119.99717 * 0.02562 * 13 12 10 32 32 H 0.96996 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1212 -0.7649 5 6 2.2363 -1.1210 0.7651 6 1 3.1712 -0.8751 1.2688 7 6 1.3586 -2.1561 1.4716 8 1 0.3910 -1.7936 1.8187 9 6 1.4363 -3.6026 0.9789 10 6 2.0617 -3.2169 2.3210 11 1 1.5567 -3.5522 3.2268 12 6 3.5888 -3.1616 2.3985 13 7 4.0687 -4.1943 3.3201 14 6 5.4106 -4.3323 3.5552 15 1 6.1155 -3.6827 3.0576 16 6 5.8649 -5.3070 4.4329 17 7 5.0059 -6.0989 5.0389 18 14 7.6956 -5.4956 4.7529 19 1 8.0895 -4.6345 5.8967 20 1 7.9985 -6.9137 5.0735 21 1 8.4542 -5.0889 3.5428 22 1 -0.3634 0.1684 1.0137 23 1 -0.3633 0.7938 -0.6528 24 1 -0.3634 -0.9621 -0.3611 25 1 3.1715 -0.8754 -1.2681 26 1 1.6111 -1.8584 -1.2683 27 1 2.1131 -3.8168 0.1518 28 1 0.5197 -4.1919 1.0017 29 1 3.8990 -2.1807 2.7584 30 1 4.0093 -3.3349 1.4079 31 1 3.4355 -4.7779 3.7667 32 1 5.3233 -6.7798 5.6525 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716602734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 30.326101 kcal Electronic energy + Delta-G solvation = -11979.597583 eV Core-core repulsion = 9940.874704 eV Total energy + Delta-G solvation = -2038.722879 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07614 -37.23611 -35.64385 -32.79292 -29.28433 -27.90034 -24.98621 -24.62761 -21.93918 -21.75856 -19.68926 -18.90088 -17.07136 -16.58617 -16.24647 -15.45127 -14.98548 -14.72135 -14.45904 -13.80175 -13.52825 -13.23302 -12.97983 -12.80332 -12.35438 -12.22588 -12.07778 -11.96330 -11.82665 -11.44088 -11.27835 -10.86547 -10.45147 -10.37448 -9.01299 -7.97007 -5.26639 1.45983 1.48707 1.57260 2.53893 2.74211 3.01634 3.36597 3.72041 3.77181 3.93107 4.07553 4.13232 4.28174 4.45625 4.52723 4.63735 4.68725 4.90623 4.97652 5.00065 5.01820 5.03367 5.11218 5.24800 5.31436 5.35852 5.39702 5.47684 5.51344 6.25561 7.31035 8.07219 8.31675 9.26987 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.070597 B = 0.006664 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.522008 B = 4200.583835 C = 4422.152906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 H 0.109 0.891 4 C -0.171 4.171 5 C -0.142 4.142 6 H 0.090 0.910 7 C -0.096 4.096 8 H 0.119 0.881 9 C -0.162 4.162 10 C -0.168 4.168 11 H 0.093 0.907 12 C 0.191 3.809 13 N -0.745 5.745 14 C -0.251 4.251 15 H 0.074 0.926 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.269 1.269 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.373 0.627 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 10.844 -10.764 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 H 0.127 0.873 4 C -0.208 4.208 5 C -0.160 4.160 6 H 0.109 0.891 7 C -0.114 4.114 8 H 0.137 0.863 9 C -0.199 4.199 10 C -0.187 4.187 11 H 0.112 0.888 12 C 0.064 3.936 13 N -0.388 5.388 14 C -0.383 4.383 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.194 1.194 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.205 0.795 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.636 10.893 -10.812 17.611 hybrid contribution 0.898 -0.640 0.702 1.308 sum -7.738 10.253 -10.110 16.347 Atomic orbital electron populations 1.21347 0.91891 1.02352 1.02129 1.22462 0.96213 0.94010 1.03115 0.87340 1.23156 1.02716 1.01814 0.93083 1.21769 1.00223 0.99862 0.94150 0.89140 1.21770 0.99473 0.88949 1.01252 0.86289 1.23135 1.02676 0.97560 0.96520 1.22419 0.94518 1.05890 0.95865 0.88844 1.20200 0.90976 0.90547 0.91837 1.42602 1.04374 1.39358 1.52467 1.19659 0.85063 1.13268 1.20287 0.90809 1.25622 1.02374 0.98645 1.00109 1.69829 1.34676 1.23801 1.33824 0.85084 0.79606 0.76587 0.78139 1.21157 1.21862 1.19397 0.92051 0.91049 0.92407 0.88762 0.88294 0.89203 0.87665 0.96590 0.96548 0.79478 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 8.91 71.98 0.64 -1.34 16 2 C -0.14 -2.78 6.41 -10.79 -0.07 -2.85 16 3 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.17 -3.70 9.52 30.60 0.29 -3.41 16 5 C -0.14 -3.63 5.35 -10.79 -0.06 -3.69 16 6 H 0.09 2.65 6.93 -2.39 -0.02 2.64 16 7 C -0.10 -2.59 5.27 -10.79 -0.06 -2.64 16 8 H 0.12 2.80 7.19 -2.39 -0.02 2.78 16 9 C -0.16 -4.64 9.52 30.60 0.29 -4.35 16 10 C -0.17 -5.92 5.84 -10.79 -0.06 -5.98 16 11 H 0.09 3.45 8.06 -2.39 -0.02 3.43 16 12 C 0.19 8.29 5.44 86.38 0.47 8.76 16 13 N -0.75 -40.60 5.60 -343.46 -1.92 -42.52 16 14 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 15 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 17 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 18 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H 0.06 1.00 7.88 -2.39 -0.02 0.98 16 23 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 27 H 0.09 2.64 7.93 -2.39 -0.02 2.62 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.61 16 29 H 0.02 0.72 7.43 -2.39 -0.02 0.70 16 30 H 0.02 0.73 7.88 -2.39 -0.02 0.71 16 31 H 0.37 21.47 7.61 -92.71 -0.71 20.76 16 32 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -65.13 266.70 3.52 -61.61 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.38 Total: 26.01 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 2.75 Total: -33.42 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -1.64 Total: -103.46 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -65.13 3.52 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716602734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.940 kcal (2) G-P(sol) polarization free energy of solvation -65.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds