Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09000 * 115.55947 * 9.34388 * 13 12 2 15 15 C 1.53119 * 117.51347 * 223.60975 * 13 12 2 16 16 C 1.52455 * 59.85673 * 252.54960 * 15 13 12 17 17 C 1.53259 * 128.58427 * 117.60236 * 16 15 13 18 18 C 1.53890 * 86.88392 * 114.94562 * 17 16 15 19 19 C 1.53257 * 128.58683 * 242.39906 * 16 15 13 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 24 24 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 25 25 H 1.09000 * 117.51554 * 359.97438 * 15 13 12 26 26 H 1.09005 * 117.51134 * 145.06161 * 15 13 12 27 27 H 1.09002 * 113.64305 * 229.44100 * 17 16 15 28 28 H 1.08993 * 113.64651 * 0.44792 * 17 16 15 29 29 H 1.09002 * 113.58743 * 270.38838 * 18 17 16 30 30 H 1.08997 * 113.58801 * 139.57243 * 18 17 16 31 31 H 1.09005 * 113.64670 * 359.55076 * 19 16 15 32 32 H 1.09002 * 113.64949 * 130.55803 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.6222 1.1989 2.1955 15 6 3.3274 0.1577 3.2359 16 6 1.9968 -0.3888 3.7408 17 6 1.6414 -1.8270 4.1336 18 6 1.4472 -1.2987 5.5659 19 6 1.1647 0.0785 4.9400 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7087 1.1612 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 4.0994 -0.5642 2.9696 26 1 3.6859 1.0915 3.6693 27 1 0.7228 -2.1914 3.6738 28 1 2.4723 -2.5253 4.0341 29 1 2.3555 -1.3263 6.1678 30 1 0.5867 -1.7303 6.0770 31 1 1.6135 0.9076 5.4871 32 1 0.1134 0.2443 4.7047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721288443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = 41.191534 kcal Electronic energy + Delta-G solvation = -12309.277578 eV Core-core repulsion = 10271.025860 eV Total energy + Delta-G solvation = -2038.251718 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.18326 -35.57038 -33.15949 -31.18811 -27.22904 -25.44508 -25.09540 -22.79873 -20.97494 -19.93882 -18.00136 -16.34124 -15.10528 -15.07520 -14.96344 -14.36717 -12.95493 -12.60980 -12.46703 -12.17586 -11.83110 -11.48481 -11.29029 -11.18384 -10.90582 -10.81180 -10.61226 -10.13058 -10.05940 -9.94742 -9.75903 -9.10434 -8.89995 -8.33456 -7.12092 -5.96149 -3.99444 3.36305 3.39881 3.43502 4.20535 4.44139 4.69145 4.89635 4.99502 5.17093 5.29007 5.35413 5.54041 5.81611 5.91016 5.95286 6.02308 6.10696 6.21362 6.30812 6.51957 6.55077 6.62226 6.73046 6.87545 7.13110 7.41700 7.76686 7.92421 8.31609 8.57180 8.65584 9.07480 9.65702 11.11011 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067928 B = 0.007827 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.099961 B = 3576.629420 C = 3667.196288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.651 5.651 13 C 0.052 3.948 14 H 0.090 0.910 15 C -0.146 4.146 16 C -0.182 4.182 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.101 4.101 20 H 0.005 0.995 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.260 0.740 24 H 0.328 0.672 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -2.073 11.969 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.280 5.280 13 C -0.060 4.060 14 H 0.107 0.893 15 C -0.184 4.184 16 C -0.183 4.183 17 C -0.133 4.133 18 C -0.173 4.173 19 C -0.139 4.139 20 H 0.024 0.976 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.146 0.854 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.672 -1.884 11.623 11.794 hybrid contribution -0.645 -0.249 -0.687 0.975 sum 0.026 -2.133 10.936 11.142 Atomic orbital electron populations 1.22451 1.00654 0.99155 1.00485 1.19245 0.89603 0.94426 0.86254 0.94728 1.21121 1.30277 1.12464 0.89642 0.92014 1.24943 0.95331 0.95214 0.99019 1.69873 1.37288 1.23210 1.23435 0.86557 0.79194 0.79580 0.82015 1.20378 1.21446 1.20285 1.60496 1.57059 1.08270 1.02190 1.22345 0.99656 0.97166 0.86799 0.89265 1.22997 0.91139 1.01453 1.02854 1.22608 1.02033 0.96947 0.96711 1.22301 1.01246 0.94552 0.95191 1.22716 1.01146 0.97081 0.96378 1.22435 0.99344 0.96808 0.95277 0.97597 0.89289 0.95414 0.93017 0.85356 0.88584 0.89577 0.90198 0.91577 0.90493 0.91904 0.91962 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.47 2.47 -68.87 -0.17 5.30 16 3 H 0.03 0.98 7.73 -51.93 -0.40 0.58 16 4 C -0.50 -14.02 8.84 -34.44 -0.30 -14.32 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.65 -14.34 6.48 -101.18 -0.66 -15.00 16 13 C 0.05 0.98 5.97 -67.93 -0.41 0.58 16 14 H 0.09 1.77 7.77 -51.93 -0.40 1.36 16 15 C -0.15 -2.39 10.46 -26.95 -0.28 -2.67 16 16 C -0.18 -2.81 2.98 -154.80 -0.46 -3.27 16 17 C -0.10 -1.32 7.60 -26.13 -0.20 -1.52 16 18 C -0.14 -1.59 8.08 -25.81 -0.21 -1.79 16 19 C -0.10 -1.31 8.10 -26.14 -0.21 -1.52 16 20 H 0.00 0.11 8.07 -51.93 -0.42 -0.31 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.33 6.91 7.98 -39.29 -0.31 6.60 16 25 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -28.48 264.40 -8.27 -36.75 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.20 Total: 4.48 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.00 Total: -21.55 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.03 Total: -40.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.48 -8.27 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721288443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.944 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds