Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09000 * 115.55947 * 9.34388 * 13 12 2 15 15 C 1.53119 * 117.51347 * 223.60975 * 13 12 2 16 16 C 1.52455 * 59.85673 * 252.54960 * 15 13 12 17 17 C 1.53259 * 128.58427 * 117.60236 * 16 15 13 18 18 C 1.53890 * 86.88392 * 114.94562 * 17 16 15 19 19 C 1.53257 * 128.58683 * 242.39906 * 16 15 13 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 24 24 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 25 25 H 1.09000 * 117.51554 * 359.97438 * 15 13 12 26 26 H 1.09005 * 117.51134 * 145.06161 * 15 13 12 27 27 H 1.09002 * 113.64305 * 229.44100 * 17 16 15 28 28 H 1.08993 * 113.64651 * 0.44792 * 17 16 15 29 29 H 1.09002 * 113.58743 * 270.38838 * 18 17 16 30 30 H 1.08997 * 113.58801 * 139.57243 * 18 17 16 31 31 H 1.09005 * 113.64670 * 359.55076 * 19 16 15 32 32 H 1.09002 * 113.64949 * 130.55803 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.6222 1.1989 2.1955 15 6 3.3274 0.1577 3.2359 16 6 1.9968 -0.3888 3.7408 17 6 1.6414 -1.8270 4.1336 18 6 1.4472 -1.2987 5.5659 19 6 1.1647 0.0785 4.9400 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7087 1.1612 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 4.0994 -0.5642 2.9696 26 1 3.6859 1.0915 3.6693 27 1 0.7228 -2.1914 3.6738 28 1 2.4723 -2.5253 4.0341 29 1 2.3555 -1.3263 6.1678 30 1 0.5867 -1.7303 6.0770 31 1 1.6135 0.9076 5.4871 32 1 0.1134 0.2443 4.7047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721288443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = 24.127883 kcal Electronic energy + Delta-G solvation = -12310.017514 eV Core-core repulsion = 10271.025860 eV Total energy + Delta-G solvation = -2038.991654 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42304 -37.32091 -34.86365 -33.00799 -29.07217 -27.24694 -26.51519 -23.86621 -22.69092 -21.71929 -19.24651 -18.29070 -16.90642 -16.60291 -16.04879 -16.02565 -14.74544 -14.51388 -14.09369 -13.42745 -13.22848 -13.11123 -12.85336 -12.82417 -12.48967 -12.33353 -12.27347 -12.17139 -11.92555 -11.22207 -11.10843 -10.85934 -10.51736 -10.43484 -8.83253 -8.10962 -6.22973 1.42621 1.44859 1.52694 2.43103 2.90055 3.16958 3.32546 3.77986 3.83510 3.97193 4.08016 4.35695 4.62699 4.66143 4.70563 4.85615 4.87294 4.87795 4.92733 5.05243 5.10559 5.12339 5.24436 5.42044 5.48088 5.54844 5.66861 5.82073 6.26270 6.64787 6.81757 6.92317 7.47189 8.94649 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067928 B = 0.007827 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.099961 B = 3576.629420 C = 3667.196288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.654 5.654 13 C 0.014 3.986 14 H 0.074 0.926 15 C -0.138 4.138 16 C -0.168 4.168 17 C -0.102 4.102 18 C -0.120 4.120 19 C -0.100 4.100 20 H 0.023 0.977 21 H 0.062 0.938 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.331 0.669 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -2.925 13.205 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.283 5.283 13 C -0.097 4.097 14 H 0.091 0.909 15 C -0.176 4.176 16 C -0.170 4.170 17 C -0.140 4.140 18 C -0.157 4.157 19 C -0.137 4.137 20 H 0.042 0.958 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.818 -2.739 12.884 13.197 hybrid contribution -0.684 0.047 -1.022 1.231 sum 0.134 -2.692 11.861 12.164 Atomic orbital electron populations 1.22241 0.99870 0.99181 0.99985 1.18974 0.90087 0.92540 0.87401 0.98257 1.21428 1.30698 1.12606 0.91125 0.92750 1.25744 0.95373 0.95872 1.01962 1.70003 1.37927 1.24261 1.24150 0.85535 0.78631 0.78690 0.78282 1.19517 1.20793 1.19917 1.60374 1.56808 1.08703 1.02375 1.22314 1.02948 0.96586 0.87836 0.90858 1.23008 0.90796 1.02289 1.01545 1.22848 1.00923 0.98598 0.94599 1.22420 1.01185 0.93441 0.96935 1.22671 1.02548 0.95394 0.95076 1.22516 0.99001 0.98278 0.93913 0.95838 0.91884 0.94957 0.92902 0.85070 0.89168 0.87750 0.90332 0.91588 0.89235 0.89956 0.90645 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 8.94 71.98 0.64 -7.00 16 2 C 0.22 11.55 2.47 44.17 0.11 11.66 16 3 H 0.00 -0.03 7.73 -2.39 -0.02 -0.05 16 4 C -0.52 -29.86 8.84 25.60 0.23 -29.64 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -54.35 11.32 21.44 0.24 -54.10 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.65 -29.19 6.48 -474.02 -3.07 -32.26 16 13 C 0.01 0.54 5.97 44.77 0.27 0.80 16 14 H 0.07 2.99 7.77 -2.39 -0.02 2.97 16 15 C -0.14 -4.37 10.46 30.45 0.32 -4.06 16 16 C -0.17 -4.92 2.98 -52.37 -0.16 -5.08 16 17 C -0.10 -2.60 7.60 30.98 0.24 -2.36 16 18 C -0.12 -2.36 8.08 31.19 0.25 -2.11 16 19 C -0.10 -2.30 8.10 30.98 0.25 -2.05 16 20 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 21 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 22 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.33 14.00 7.98 -89.70 -0.72 13.28 16 25 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -60.99 264.40 2.16 -58.83 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.37 Total: 19.67 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.60 Total: -38.88 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.83 Total: -86.36 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.99 2.16 -58.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721288443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.955 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds