Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.36933 * 120.00337 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99878 * 359.97438 * 8 7 6 10 10 C 1.38816 * 120.00441 * 180.02562 * 8 7 6 11 11 N 1.31615 * 120.00374 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99783 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.46866 * 90.00158 * 12 10 8 14 14 H 1.48500 * 109.46884 * 210.00020 * 12 10 8 15 15 H 1.48498 * 109.46962 * 330.00101 * 12 10 8 16 16 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 17 17 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 18 18 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 19 19 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 20 20 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 21 21 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 22 22 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 23 23 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 24 24 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 25 25 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 26 26 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 27 27 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 28 28 H 0.97001 * 120.00177 * 180.02562 * 11 10 8 29 29 H 1.09003 * 109.48320 * 176.42559 * 16 5 4 30 30 H 1.08997 * 109.49150 * 56.38933 * 16 5 4 31 31 H 1.08997 * 109.62461 * 248.09547 * 17 2 1 32 32 H 1.08996 * 109.62473 * 8.47434 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 7.0140 1.3458 -2.7125 9 1 7.1786 0.6739 -3.5418 10 6 7.8700 2.4194 -2.5086 11 7 8.8814 2.6194 -3.3268 12 14 7.5858 3.5812 -1.0737 13 1 8.3232 3.0871 0.1168 14 1 8.0740 4.9374 -1.4307 15 1 6.1342 3.6426 -0.7666 16 6 3.1098 -1.2489 -1.1449 17 6 2.0857 -1.2987 -0.0062 18 1 -0.5400 -0.9354 -0.0046 19 1 -0.5399 0.9352 0.0045 20 1 1.4021 2.1334 -0.1548 21 1 2.6023 1.4165 0.9525 22 1 3.7420 2.1411 -1.0942 23 1 2.5886 1.2269 -2.0958 24 1 4.4488 -0.0001 -0.0117 25 1 5.6245 -0.9254 -2.0265 26 1 4.5909 0.0936 -3.0571 27 1 5.8139 1.7415 -1.1164 28 1 9.4798 3.3693 -3.1841 29 1 3.7418 -2.1361 -1.1044 30 1 2.5886 -1.2173 -2.1016 31 1 2.6023 -1.4212 0.9457 32 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724440367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = 5.407919 kcal Electronic energy + Delta-G solvation = -12317.997761 eV Core-core repulsion = 10278.194348 eV Total energy + Delta-G solvation = -2039.803412 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.70046 -35.07976 -32.69171 -31.00675 -30.66043 -27.29566 -23.95536 -22.92770 -21.58033 -20.11856 -18.32937 -17.50956 -14.84982 -14.78872 -14.59750 -14.23046 -13.74633 -13.63934 -12.98323 -12.69030 -12.30754 -12.06745 -11.85764 -11.36553 -11.17352 -10.86154 -10.78285 -10.41082 -10.13739 -9.96617 -9.91866 -9.53338 -8.96485 -8.85189 -7.17666 -5.73458 -3.07988 2.27346 3.39088 3.41947 3.46890 4.62062 4.69988 4.86241 5.05235 5.24191 5.27085 5.46108 5.55939 5.57586 5.64142 5.69382 5.84654 5.87613 5.99439 6.02714 6.21847 6.25223 6.30979 6.45956 6.49069 6.70334 6.79347 6.88355 6.94733 8.04109 8.46101 9.25861 9.98409 10.19107 11.45280 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058519 B = 0.008593 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.365723 B = 3257.528130 C = 3572.486465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.098 4.098 6 C 0.161 3.839 7 N -0.756 5.756 8 C -0.242 4.242 9 H 0.089 0.911 10 C 0.002 3.998 11 N -0.936 5.936 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.107 4.107 17 C -0.086 4.086 18 H 0.094 0.906 19 H 0.094 0.906 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.360 0.640 28 H 0.259 0.741 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -5.516 7.563 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.107 4.107 3 C -0.127 4.127 4 C -0.146 4.146 5 C -0.117 4.117 6 C 0.034 3.966 7 N -0.402 5.402 8 C -0.372 4.372 9 H 0.107 0.893 10 C -0.193 4.193 11 N -0.584 5.584 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.145 4.145 17 C -0.124 4.124 18 H 0.112 0.888 19 H 0.112 0.888 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.193 0.807 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.064 -5.546 7.360 17.660 hybrid contribution -0.101 0.944 0.963 1.352 sum -15.165 -4.602 8.322 17.901 Atomic orbital electron populations 1.23545 0.95010 1.01421 1.04907 1.22070 0.94970 0.96213 0.97478 1.20882 0.97783 0.94297 0.99697 1.21577 0.96597 0.98733 0.97741 1.21351 0.95790 0.94253 1.00305 1.20668 0.89695 0.90946 0.95298 1.42747 1.32394 1.30975 1.34051 1.19092 1.01656 1.09652 1.06772 0.89273 1.24670 0.97478 0.98610 0.98554 1.69702 1.17893 1.32020 1.38825 0.86551 0.77547 0.81210 0.83268 1.21119 1.21742 1.20317 1.21519 0.96776 0.98048 0.98153 1.20832 0.97636 0.94385 0.99501 0.88799 0.88773 0.91660 0.91116 0.91086 0.91909 0.91313 0.95600 0.95641 0.80669 0.93119 0.91584 0.91819 0.91067 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.29 13.99 29.01 0.41 -1.89 16 2 C -0.11 -1.29 5.35 -100.51 -0.54 -1.83 16 3 C -0.09 -1.15 6.03 -27.49 -0.17 -1.32 16 4 C -0.11 -1.67 5.13 -26.63 -0.14 -1.81 16 5 C -0.10 -1.55 2.12 -90.66 -0.19 -1.74 16 6 C 0.16 3.21 5.65 -4.05 -0.02 3.18 16 7 N -0.76 -18.46 5.09 -59.91 -0.31 -18.76 16 8 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 9 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 10 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 11 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 12 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 16 C -0.11 -1.39 5.22 -26.63 -0.14 -1.52 16 17 C -0.09 -0.99 6.03 -27.48 -0.17 -1.15 16 18 H 0.09 0.90 7.92 -52.48 -0.42 0.48 16 19 H 0.09 0.95 7.92 -52.49 -0.42 0.53 16 20 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.36 8.55 4.68 -40.82 -0.19 8.35 16 28 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 LS Contribution 257.89 15.07 3.89 3.89 Total: -1.00 -31.12 257.89 -6.75 -37.87 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.18 Total: 3.68 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.21 Total: -15.29 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.47 Total: -47.92 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.12 -6.75 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724440367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.279 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds