Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.36933 * 120.00337 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99878 * 359.97438 * 8 7 6 10 10 C 1.38816 * 120.00441 * 180.02562 * 8 7 6 11 11 N 1.31615 * 120.00374 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99783 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.46866 * 90.00158 * 12 10 8 14 14 H 1.48500 * 109.46884 * 210.00020 * 12 10 8 15 15 H 1.48498 * 109.46962 * 330.00101 * 12 10 8 16 16 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 17 17 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 18 18 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 19 19 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 20 20 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 21 21 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 22 22 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 23 23 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 24 24 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 25 25 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 26 26 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 27 27 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 28 28 H 0.97001 * 120.00177 * 180.02562 * 11 10 8 29 29 H 1.09003 * 109.48320 * 176.42559 * 16 5 4 30 30 H 1.08997 * 109.49150 * 56.38933 * 16 5 4 31 31 H 1.08997 * 109.62461 * 248.09547 * 17 2 1 32 32 H 1.08996 * 109.62473 * 8.47434 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 7.0140 1.3458 -2.7125 9 1 7.1786 0.6739 -3.5418 10 6 7.8700 2.4194 -2.5086 11 7 8.8814 2.6194 -3.3268 12 14 7.5858 3.5812 -1.0737 13 1 8.3232 3.0871 0.1168 14 1 8.0740 4.9374 -1.4307 15 1 6.1342 3.6426 -0.7666 16 6 3.1098 -1.2489 -1.1449 17 6 2.0857 -1.2987 -0.0062 18 1 -0.5400 -0.9354 -0.0046 19 1 -0.5399 0.9352 0.0045 20 1 1.4021 2.1334 -0.1548 21 1 2.6023 1.4165 0.9525 22 1 3.7420 2.1411 -1.0942 23 1 2.5886 1.2269 -2.0958 24 1 4.4488 -0.0001 -0.0117 25 1 5.6245 -0.9254 -2.0265 26 1 4.5909 0.0936 -3.0571 27 1 5.8139 1.7415 -1.1164 28 1 9.4798 3.3693 -3.1841 29 1 3.7418 -2.1361 -1.1044 30 1 2.5886 -1.2173 -2.1016 31 1 2.6023 -1.4212 0.9457 32 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724440367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = -13.604345 kcal Electronic energy + Delta-G solvation = -12318.822194 eV Core-core repulsion = 10278.194348 eV Total energy + Delta-G solvation = -2040.627846 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83117 -36.75692 -34.35398 -32.65138 -31.91362 -28.72431 -25.58426 -24.09496 -23.20946 -21.44151 -19.74125 -19.17056 -16.63135 -16.16432 -15.71393 -15.68370 -15.24912 -14.69617 -14.64289 -14.30034 -13.64441 -13.52396 -13.14760 -12.92030 -12.61230 -12.36137 -12.16919 -11.87478 -11.83598 -11.60446 -11.18241 -11.04404 -10.91785 -9.84887 -9.30378 -8.04605 -5.37791 1.35449 1.39384 1.42278 1.46867 2.46737 3.26481 3.58870 3.79470 3.86891 3.98313 4.22518 4.34954 4.46353 4.54769 4.56148 4.75618 4.80077 4.97024 5.02821 5.07456 5.10277 5.12993 5.22296 5.30196 5.38171 5.54335 5.73970 5.82413 6.05595 6.19915 7.06388 7.83096 8.03200 9.17201 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058519 B = 0.008593 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.365723 B = 3257.528130 C = 3572.486465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.085 4.085 4 C -0.107 4.107 5 C -0.089 4.089 6 C 0.157 3.843 7 N -0.757 5.757 8 C -0.238 4.238 9 H 0.054 0.946 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.956 3.044 13 H -0.276 1.276 14 H -0.293 1.293 15 H -0.251 1.251 16 C -0.103 4.103 17 C -0.081 4.081 18 H 0.109 0.891 19 H 0.101 0.899 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.366 0.634 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.425 -5.702 9.473 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.129 4.129 3 C -0.122 4.122 4 C -0.145 4.145 5 C -0.107 4.107 6 C 0.031 3.969 7 N -0.403 5.403 8 C -0.369 4.369 9 H 0.072 0.928 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.782 3.218 13 H -0.202 1.202 14 H -0.220 1.220 15 H -0.176 1.176 16 C -0.141 4.141 17 C -0.118 4.118 18 H 0.127 0.873 19 H 0.119 0.881 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.200 0.800 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.306 -5.764 9.284 20.468 hybrid contribution 0.549 0.923 0.276 1.109 sum -16.757 -4.841 9.560 19.890 Atomic orbital electron populations 1.23762 0.94650 1.02540 1.02535 1.22064 0.95449 0.95817 0.99530 1.20820 0.97322 0.95508 0.98521 1.21523 0.96831 0.97323 0.98843 1.21266 0.94914 0.96196 0.98368 1.20860 0.90163 0.89148 0.96759 1.42749 1.31870 1.32340 1.33361 1.19078 1.02788 1.08755 1.06276 0.92773 1.25534 0.97336 1.00788 1.01942 1.69888 1.19307 1.33025 1.41291 0.85401 0.78912 0.78126 0.79339 1.20245 1.21983 1.17585 1.21477 0.96891 0.96575 0.99113 1.20807 0.97364 0.94875 0.98775 0.87294 0.88108 0.90768 0.90892 0.93395 0.92353 0.91258 0.95869 0.96309 0.80024 0.93267 0.90923 0.91871 0.90622 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.55 13.99 67.78 0.95 -2.61 16 2 C -0.13 -2.68 5.35 -16.13 -0.09 -2.77 16 3 C -0.08 -1.97 6.03 30.11 0.18 -1.79 16 4 C -0.11 -3.14 5.13 30.66 0.16 -2.98 16 5 C -0.09 -2.66 2.12 -10.82 -0.02 -2.68 16 6 C 0.16 6.20 5.65 86.38 0.49 6.69 16 7 N -0.76 -36.80 5.09 -343.45 -1.75 -38.55 16 8 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 9 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 10 C -0.06 -3.91 5.50 84.86 0.47 -3.45 16 11 N -0.98 -64.47 13.97 21.65 0.30 -64.17 16 12 Si 0.96 46.35 27.74 68.60 1.90 48.25 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 16 C -0.10 -2.43 5.22 30.66 0.16 -2.27 16 17 C -0.08 -1.59 6.03 30.11 0.18 -1.41 16 18 H 0.11 1.63 7.92 -2.91 -0.02 1.61 16 19 H 0.10 1.67 7.92 -2.91 -0.02 1.64 16 20 H 0.07 1.58 7.89 -2.39 -0.02 1.56 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.60 7.07 -2.39 -0.02 1.58 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.37 16.87 4.68 -92.70 -0.43 16.44 16 28 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.36 7.89 -2.39 -0.02 1.34 16 Total: -1.00 -67.09 257.89 4.39 -62.71 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.58 Total: 18.26 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 3.35 Total: -26.49 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -1.45 Total: -102.72 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.25 kcal Total: -67.09 4.39 -62.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724440367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.102 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds