Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47157 * 2 1 4 4 C 1.50706 * 109.46801 * 240.00444 * 2 1 3 5 5 H 1.07998 * 120.00014 * 239.99772 * 4 2 1 6 6 C 1.37873 * 119.99834 * 59.99759 * 4 2 1 7 7 N 1.31515 * 120.00694 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47471 * 89.99823 * 8 6 4 10 10 H 1.48500 * 109.47114 * 209.99929 * 8 6 4 11 11 H 1.48502 * 109.46777 * 329.99959 * 8 6 4 12 12 N 1.46897 * 109.47497 * 120.00740 * 2 1 3 13 13 C 1.47479 * 110.99965 * 201.52573 * 12 2 1 14 14 C 1.53517 * 87.99753 * 138.66774 * 13 12 2 15 15 C 1.47487 * 110.99585 * 297.49539 * 12 2 1 16 16 H 1.09000 * 113.47617 * 336.11847 * 15 12 2 17 17 C 1.52995 * 113.47711 * 106.52926 * 15 12 2 18 18 C 1.52991 * 117.50157 * 248.74483 * 17 15 12 19 19 C 1.52999 * 117.50072 * 180.08103 * 17 15 12 20 20 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46936 * 299.99626 * 1 2 3 22 22 H 1.08991 * 109.47288 * 59.99464 * 1 2 3 23 23 H 0.96996 * 120.00450 * 179.97438 * 7 6 4 24 24 H 1.09002 * 113.47562 * 253.46722 * 13 12 2 25 25 H 1.09003 * 113.47677 * 23.87325 * 13 12 2 26 26 H 1.09000 * 114.16717 * 87.65445 * 14 13 12 27 27 H 1.09000 * 114.16856 * 220.35478 * 14 13 12 28 28 H 1.09007 * 115.54879 * 34.42147 * 17 15 12 29 29 H 1.09005 * 117.49745 * 0.02562 * 18 17 15 30 30 H 1.09003 * 117.49870 * 145.02068 * 18 17 15 31 31 H 1.08991 * 117.50507 * 214.97700 * 19 17 15 32 32 H 1.09005 * 117.49648 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4862 -0.1411 -5.1124 11 1 3.6291 -1.7581 -3.7124 12 7 2.0198 -0.6926 1.1993 13 6 3.4035 -0.2908 1.5136 14 6 2.9991 -0.2535 2.9941 15 6 1.5966 0.0099 2.4251 16 1 1.3834 1.0673 2.2680 17 6 0.4832 -0.7112 3.1874 18 6 -0.8967 -0.0511 3.2142 19 6 -0.0278 -0.0606 4.4744 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8898 23 1 0.7093 1.1620 -3.4843 24 1 4.1416 -1.0594 1.2843 25 1 3.6737 0.6861 1.1126 26 1 3.0999 -1.2092 3.5085 27 1 3.4201 0.5838 3.5508 28 1 0.5197 -1.8001 3.1541 29 1 -1.0115 0.8969 2.6884 30 1 -1.7682 -0.7057 3.1989 31 1 -0.3280 -0.7213 5.2876 32 1 0.4296 0.8810 4.7783 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885274937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = 38.067010 kcal Electronic energy + Delta-G solvation = -12709.130477 eV Core-core repulsion = 10670.743269 eV Total energy + Delta-G solvation = -2038.387208 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12941 -37.31283 -35.56244 -32.45615 -27.96794 -27.47201 -26.58594 -23.25265 -22.19475 -21.86755 -20.43341 -18.38028 -17.27688 -16.57333 -15.95694 -15.66768 -14.94211 -14.74179 -14.22101 -13.75003 -13.19932 -12.98595 -12.77890 -12.56839 -12.50375 -12.31926 -12.12026 -11.92341 -11.69637 -11.39705 -11.09963 -10.83015 -10.59005 -10.48696 -9.46872 -8.13856 -6.26519 1.38648 1.39602 1.50324 2.39653 2.90638 3.13169 3.46708 3.70356 3.92844 4.15915 4.21534 4.39163 4.40648 4.69221 4.73015 4.79090 4.82319 4.86880 4.98400 5.03222 5.09518 5.11970 5.31953 5.34143 5.36625 5.45556 5.57342 5.71033 6.11524 6.28192 6.62439 6.86462 7.42495 8.91628 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052263 B = 0.010359 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.627536 B = 2702.209551 C = 3039.437435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.186 3.814 3 H -0.030 1.030 4 C -0.519 4.519 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.478 5.478 13 C 0.000 4.000 14 C -0.116 4.116 15 C 0.054 3.946 16 H 0.051 0.949 17 C -0.138 4.138 18 C -0.192 4.192 19 C -0.150 4.150 20 H 0.022 0.978 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.262 0.738 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -1.052 11.586 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 H -0.013 1.013 4 C -0.557 4.557 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.201 5.201 13 C -0.129 4.129 14 C -0.153 4.153 15 C -0.056 4.056 16 H 0.069 0.931 17 C -0.157 4.157 18 C -0.229 4.229 19 C -0.187 4.187 20 H 0.042 0.958 21 H 0.057 0.943 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.220 -1.635 11.284 11.404 hybrid contribution 0.259 0.694 -1.399 1.584 sum 0.480 -0.941 9.885 9.941 Atomic orbital electron populations 1.21624 0.97211 0.98812 0.99943 1.19547 0.93151 0.90432 0.89042 1.01290 1.21327 1.31016 1.12147 0.91252 0.93217 1.25743 0.95391 0.95803 1.01961 1.70017 1.37827 1.24140 1.24066 0.85510 0.78805 0.78284 0.78755 1.20108 1.20568 1.19438 1.68888 1.04302 1.45337 1.01531 1.23537 0.93626 0.99233 0.96531 1.23147 0.94043 1.03444 0.94682 1.22835 0.95193 0.95414 0.92161 0.93108 1.22008 0.94287 0.98716 1.00680 1.22995 0.94746 1.02396 1.02729 1.22995 1.02125 1.02845 0.90774 0.95846 0.94296 0.92667 0.92893 0.90790 0.93587 0.87966 0.89144 0.88273 0.90230 0.88467 0.86852 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.77 71.98 0.63 -5.42 16 2 C 0.19 9.93 1.68 44.17 0.07 10.01 16 3 H -0.03 -1.79 7.55 -2.39 -0.02 -1.81 16 4 C -0.52 -30.17 8.63 25.60 0.22 -29.95 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.64 11.32 21.45 0.24 -54.40 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.48 -21.40 5.92 -880.56 -5.21 -26.61 16 13 C 0.00 0.00 7.50 83.58 0.63 0.63 16 14 C -0.12 -3.44 8.02 30.98 0.25 -3.19 16 15 C 0.05 1.92 2.16 42.23 0.09 2.02 16 16 H 0.05 1.97 7.75 -2.39 -0.02 1.95 16 17 C -0.14 -4.28 5.44 -10.80 -0.06 -4.34 16 18 C -0.19 -5.51 9.10 30.62 0.28 -5.23 16 19 C -0.15 -3.48 10.26 30.62 0.31 -3.17 16 20 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.04 1.75 4.64 -2.38 -0.01 1.74 16 22 H 0.05 3.12 6.07 -2.39 -0.01 3.10 16 23 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.05 1.90 7.58 -2.39 -0.02 1.88 16 26 H 0.10 2.73 8.12 -2.39 -0.02 2.71 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 29 H 0.08 2.49 7.07 -2.38 -0.02 2.47 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 2.12 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -63.16 256.84 1.01 -62.15 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.08 Total: 9.31 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.88 Total: -37.66 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -4.97 Total: -81.00 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.16 1.01 -62.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885274937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.216 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds