Wall clock time and date at job start Mon Mar 30 2020 02:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34203 * 125.76699 * 125.00193 * 10 9 7 12 12 C 1.37915 * 107.43517 * 180.02562 * 11 10 9 13 Xx 1.57008 * 126.39065 * 179.97438 * 12 11 10 14 13 O 1.42003 * 119.99881 * 0.02562 * 13 12 11 15 14 O 1.41994 * 119.99817 * 180.02562 * 13 12 11 16 15 C 1.41129 * 107.21667 * 359.97438 * 12 11 10 17 16 N 1.30444 * 108.02989 * 359.72132 * 16 12 11 18 17 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 20 H 1.07995 * 126.28161 * 359.97438 * 11 10 9 22 21 H 0.96696 * 113.99406 * 179.97438 * 14 13 12 23 22 H 0.96703 * 113.99989 * 180.02562 * 15 13 12 24 23 H 1.07996 * 125.98476 * 179.97438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.8503 -3.1066 -0.8918 12 6 5.0515 -4.4241 -0.5371 13 8 6.6906 -5.0654 -2.4378 14 8 6.0763 -6.7893 -0.7946 15 6 4.2790 -4.6681 0.6185 16 7 3.6629 -3.5623 0.9333 17 1 -0.4850 0.8401 -0.0004 18 1 3.8751 -0.6798 -0.8895 19 1 3.8745 -0.6810 0.8905 20 1 5.2951 -2.5963 -1.7333 21 1 7.2275 -5.7703 -2.8252 22 1 6.6637 -7.3524 -1.3171 23 1 4.2129 -5.6051 1.1515 There are 33 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 33 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689661079.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:59 Heat of formation + Delta-G solvation = 195.231677 kcal Electronic energy + Delta-G solvation = -10450.804702 eV Core-core repulsion = 8196.710967 eV Total energy + Delta-G solvation = -2254.093735 eV No. of doubly occupied orbitals = 33 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 185.071 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54646 -36.33075 -33.45971 -29.94303 -28.88972 -28.37268 -28.15481 -24.59407 -20.31466 -20.12443 -19.32273 -17.12519 -16.07079 -15.16370 -14.45122 -13.86659 -13.67039 -13.20993 -12.37249 -12.18805 -12.09894 -11.59041 -11.56138 -11.03444 -10.99161 -10.52317 -9.18890 -9.07532 -7.82878 -6.98540 -6.91653 -6.58846 -5.58136 -3.98984 0.14196 1.74214 1.78329 1.99570 2.25135 2.46941 2.59837 2.84128 3.55181 4.23734 4.69388 4.95661 5.26903 5.49226 5.59942 5.74494 6.04867 6.10873 6.65478 6.93713 7.26111 7.68015 8.16516 10.16015 10.29614 Molecular weight = 185.07amu Principal moments of inertia in cm(-1) A = 0.067762 B = 0.008647 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.112014 B = 3237.269865 C = 3444.341856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.064 4.064 3 Si 0.931 3.069 4 H -0.238 1.238 5 H -0.247 1.247 6 H -0.233 1.233 7 C -0.094 4.094 8 H 0.144 0.856 9 C 0.160 3.840 10 N -0.381 5.381 11 C 0.021 3.979 12 C 0.096 3.904 13 O -0.878 6.878 14 O -0.865 6.865 15 C 0.059 3.941 16 N -0.296 5.296 17 H 0.333 0.667 18 H 0.122 0.878 19 H 0.114 0.886 20 H 0.186 0.814 21 H 0.268 0.732 22 H 0.269 0.731 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 18.967 4.866 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.252 5.252 2 C -0.276 4.276 3 Si 0.747 3.253 4 H -0.162 1.162 5 H -0.170 1.170 6 H -0.156 1.156 7 C -0.113 4.113 8 H 0.161 0.839 9 C 0.040 3.960 10 N -0.171 5.171 11 C -0.122 4.122 12 C 0.062 3.938 13 O -0.693 6.693 14 O -0.678 6.678 15 C -0.124 4.124 16 N -0.123 5.123 17 H 0.147 0.853 18 H 0.139 0.861 19 H 0.132 0.868 20 H 0.203 0.797 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.091 20.477 6.251 24.588 hybrid contribution 1.484 -0.904 -1.380 2.219 sum -10.608 19.574 4.871 22.790 Atomic orbital electron populations 1.69871 1.08180 1.35882 1.11311 1.26534 0.96692 1.04818 0.99562 0.85687 0.80995 0.75926 0.82651 1.16156 1.17032 1.15565 1.25481 0.94279 0.99028 0.92504 0.83884 1.20868 0.91829 0.79455 1.03890 1.47896 1.37625 1.09184 1.22428 1.22802 0.97240 0.94460 0.97671 1.31777 0.91566 0.81387 0.89099 1.93488 1.68512 1.43376 1.63907 1.93526 1.68183 1.43405 1.62701 1.24483 0.94587 0.97291 0.96032 1.77379 1.24898 0.96360 1.13660 0.85344 0.86062 0.86846 0.79690 0.90193 0.90122 0.78737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -6.79 13.96 55.43 0.77 -6.02 14 2 C -0.06 -0.65 5.47 -17.82 -0.10 -0.75 14 3 Si 0.93 7.03 27.47 -169.99 -4.67 2.36 14 4 H -0.24 -1.88 7.11 56.52 0.40 -1.48 14 5 H -0.25 -1.90 7.11 56.52 0.40 -1.50 14 6 H -0.23 -1.67 6.54 56.52 0.37 -1.30 14 7 C -0.09 -1.11 9.79 -34.44 -0.34 -1.45 14 8 H 0.14 2.03 8.06 -52.49 -0.42 1.61 14 9 C 0.16 1.88 5.31 -5.19 -0.03 1.85 14 10 N -0.38 -6.73 3.64 -62.04 -0.23 -6.96 14 11 C 0.02 0.44 11.46 -16.63 -0.19 0.25 14 12 C 0.10 2.66 10.28 -38.60 -0.40 2.26 14 13 O -0.88 -33.52 17.74 -57.73 -1.02 -34.54 14 14 O -0.86 -33.13 17.75 -57.73 -1.02 -34.15 14 15 C 0.06 1.37 12.04 -17.04 -0.21 1.17 14 16 N -0.30 -5.88 12.33 30.83 0.38 -5.50 14 17 H 0.33 2.89 8.31 -40.82 -0.34 2.55 14 18 H 0.12 1.05 7.49 -51.93 -0.39 0.66 14 19 H 0.11 1.10 7.20 -51.93 -0.37 0.72 14 20 H 0.19 3.64 8.06 -52.49 -0.42 3.21 14 21 H 0.27 9.78 8.90 45.56 0.41 10.19 14 22 H 0.27 9.81 8.90 45.56 0.41 10.21 14 23 H 0.20 4.23 8.06 -52.49 -0.42 3.81 14 LS Contribution 232.96 15.07 3.51 3.51 Total: -1.00 -45.37 232.96 -3.92 -49.29 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.39 Total: 28.67 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.25 Total: 3.34 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.93 Total: -18.47 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -2.05 Total: -68.70 kcal Atomic # 14 Polarization: 7.03 SS G_CDS: -4.67 Total: 2.36 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -45.37 -3.92 -49.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689661079.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.518 kcal (2) G-P(sol) polarization free energy of solvation -45.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds