Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34823 * 125.77605 * 2 1 4 4 C 1.41467 * 108.08374 * 179.88484 * 3 2 1 5 5 O 1.21785 * 126.19351 * 180.15238 * 4 3 2 6 6 N 1.34865 * 107.61770 * 0.37909 * 4 3 2 7 7 C 1.46498 * 126.16829 * 179.79219 * 6 4 3 8 8 C 1.50702 * 109.47173 * 274.97842 * 7 6 4 9 9 H 1.08000 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99909 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00510 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99941 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47124 * 89.99780 * 12 10 8 14 14 H 1.48502 * 109.47260 * 209.99834 * 12 10 8 15 15 H 1.48496 * 109.47297 * 329.99580 * 12 10 8 16 16 N 1.36599 * 125.77234 * 180.30835 * 2 1 3 17 17 C 1.46496 * 125.91203 * 359.94403 * 16 2 1 18 18 H 1.09002 * 109.47152 * 269.69087 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.69188 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.69168 * 1 2 3 21 21 H 1.08006 * 125.95431 * 359.97438 * 3 2 1 22 22 H 1.08999 * 109.46920 * 34.97644 * 7 6 4 23 23 H 1.09006 * 109.47375 * 154.97809 * 7 6 4 24 24 H 0.96996 * 120.00871 * 180.02562 * 11 10 8 25 25 H 1.08997 * 109.47453 * 0.02562 * 17 16 2 26 26 H 1.09005 * 109.47640 * 120.02114 * 17 16 2 27 27 H 1.09004 * 109.47060 * 240.02292 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2952 1.0938 0.0000 4 6 3.6430 0.6639 0.0027 5 8 4.6268 1.3817 0.0061 6 7 3.6412 -0.6847 -0.0042 7 6 4.8228 -1.5508 -0.0086 8 6 5.3009 -1.7411 -1.4251 9 1 4.7767 -1.2649 -2.2405 10 6 6.4068 -2.5240 -1.6801 11 7 7.0448 -3.1043 -0.6873 12 14 6.9998 -2.7593 -3.4358 13 1 7.9820 -1.6978 -3.7729 14 1 7.6452 -4.0903 -3.5661 15 1 5.8437 -2.6768 -4.3641 16 7 2.3055 -1.1083 -0.0060 17 6 1.8452 -2.4990 -0.0123 18 1 -0.3633 -0.0055 1.0277 19 1 -0.3633 -0.8872 -0.5186 20 1 -0.3633 0.8928 -0.5091 21 1 1.9566 2.1194 -0.0004 22 1 5.6136 -1.0895 0.5828 23 1 4.5653 -2.5189 0.4211 24 1 7.8230 -3.6548 -0.8666 25 1 0.7554 -2.5211 -0.0120 26 1 2.2184 -3.0013 -0.9048 27 1 2.2192 -3.0096 0.8752 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034540542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 39.450793 kcal Electronic energy + Delta-G solvation = -12395.714943 eV Core-core repulsion = 10156.128735 eV Total energy + Delta-G solvation = -2239.586208 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.67798 -36.26343 -33.86646 -32.23297 -31.50696 -29.19115 -26.24180 -25.21549 -22.78495 -20.24973 -19.04484 -16.76825 -16.44450 -15.22006 -14.83579 -14.43363 -14.13517 -13.24876 -13.13285 -12.98263 -12.74184 -12.32789 -12.12420 -12.02164 -11.54542 -11.09566 -10.79658 -10.66535 -10.27347 -9.77870 -8.72866 -8.56192 -8.21491 -6.90269 -6.17670 -4.25183 2.25591 2.42813 3.25769 3.32258 3.35523 4.21555 4.36216 4.55476 4.84568 5.12298 5.17834 5.22304 5.46929 5.55014 5.76540 5.84010 6.16858 6.39783 6.63941 6.91605 7.07704 7.27784 7.73880 7.98569 8.02520 8.37400 8.78317 9.32721 9.46090 10.89073 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044548 B = 0.010946 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.390967 B = 2557.305207 C = 2778.640024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.158 3.842 3 C -0.360 4.360 4 C 0.522 3.478 5 O -0.571 6.571 6 N -0.392 5.392 7 C 0.263 3.737 8 C -0.535 4.535 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.906 3.094 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.273 1.273 16 N -0.389 5.389 17 C 0.104 3.896 18 H 0.081 0.919 19 H 0.070 0.930 20 H 0.088 0.912 21 H 0.148 0.852 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.267 0.733 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -0.478 1.318 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 C -0.392 4.392 4 C 0.318 3.682 5 O -0.452 6.452 6 N -0.213 5.213 7 C 0.146 3.854 8 C -0.574 4.574 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.532 5.532 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.198 1.198 16 N -0.180 5.180 17 C -0.037 4.037 18 H 0.100 0.900 19 H 0.089 0.911 20 H 0.106 0.894 21 H 0.166 0.834 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.132 -0.651 1.367 13.220 hybrid contribution 0.440 -0.343 -0.950 1.101 sum -12.692 -0.993 0.418 12.738 Atomic orbital electron populations 1.20546 0.87391 1.03837 1.03272 1.20715 0.93086 0.85893 0.96346 1.21662 0.93453 0.98464 1.25636 1.16864 0.90565 0.80352 0.80371 1.90780 1.40534 1.56443 1.57451 1.49438 0.94659 1.07760 1.69442 1.19567 0.78454 0.88779 0.98629 1.21423 1.13162 1.30502 0.92269 0.91976 1.24937 0.95798 0.95083 0.98052 1.69920 1.20025 1.32083 1.31212 0.86371 0.79075 0.77506 0.83782 1.20191 1.20974 1.19829 1.46242 0.96814 1.04964 1.70013 1.21815 0.99651 0.78481 1.03797 0.90042 0.91086 0.89357 0.83391 0.92319 0.94351 0.92371 0.89190 0.90362 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.94 36.01 0.36 -0.52 15 2 C 0.16 2.54 6.94 -81.68 -0.57 1.98 15 3 C -0.36 -7.06 10.73 -39.56 -0.42 -7.49 15 4 C 0.52 13.26 7.95 -14.99 -0.12 13.14 15 5 O -0.57 -16.86 17.92 5.11 0.09 -16.77 15 6 N -0.39 -9.51 3.60 -64.43 -0.23 -9.75 15 7 C 0.26 7.11 5.75 -5.19 -0.03 7.08 15 8 C -0.53 -15.52 9.39 -34.44 -0.32 -15.85 15 9 H 0.06 1.85 7.81 -52.49 -0.41 1.44 15 10 C 0.06 1.83 5.46 -17.82 -0.10 1.73 15 11 N -0.89 -26.17 13.29 55.43 0.74 -25.43 15 12 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 15 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 16 N -0.39 -7.20 4.06 -63.61 -0.26 -7.46 15 17 C 0.10 1.42 10.71 59.84 0.64 2.06 15 18 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.07 0.55 7.09 -51.93 -0.37 0.18 15 20 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.15 2.53 8.06 -52.48 -0.42 2.10 15 22 H 0.06 1.75 8.14 -51.93 -0.42 1.33 15 23 H 0.04 1.00 7.75 -51.93 -0.40 0.60 15 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.09 0.81 6.67 -51.93 -0.35 0.46 15 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 242.98 15.07 3.66 3.66 Total: -1.00 -35.76 242.98 -4.78 -40.54 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.20 Total: -3.83 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.56 Total: 2.13 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.25 Total: -42.64 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.09 Total: -16.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -35.76 -4.78 -40.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034540542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.993 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds