Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34823 * 125.77605 * 2 1 4 4 C 1.41467 * 108.08374 * 179.88484 * 3 2 1 5 5 O 1.21785 * 126.19351 * 180.15238 * 4 3 2 6 6 N 1.34865 * 107.61770 * 0.37909 * 4 3 2 7 7 C 1.46498 * 126.16829 * 179.79219 * 6 4 3 8 8 C 1.50702 * 109.47173 * 274.97842 * 7 6 4 9 9 H 1.08000 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99909 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00510 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99941 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47124 * 89.99780 * 12 10 8 14 14 H 1.48502 * 109.47260 * 209.99834 * 12 10 8 15 15 H 1.48496 * 109.47297 * 329.99580 * 12 10 8 16 16 N 1.36599 * 125.77234 * 180.30835 * 2 1 3 17 17 C 1.46496 * 125.91203 * 359.94403 * 16 2 1 18 18 H 1.09002 * 109.47152 * 269.69087 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.69188 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.69168 * 1 2 3 21 21 H 1.08006 * 125.95431 * 359.97438 * 3 2 1 22 22 H 1.08999 * 109.46920 * 34.97644 * 7 6 4 23 23 H 1.09006 * 109.47375 * 154.97809 * 7 6 4 24 24 H 0.96996 * 120.00871 * 180.02562 * 11 10 8 25 25 H 1.08997 * 109.47453 * 0.02562 * 17 16 2 26 26 H 1.09005 * 109.47640 * 120.02114 * 17 16 2 27 27 H 1.09004 * 109.47060 * 240.02292 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2952 1.0938 0.0000 4 6 3.6430 0.6639 0.0027 5 8 4.6268 1.3817 0.0061 6 7 3.6412 -0.6847 -0.0042 7 6 4.8228 -1.5508 -0.0086 8 6 5.3009 -1.7411 -1.4251 9 1 4.7767 -1.2649 -2.2405 10 6 6.4068 -2.5240 -1.6801 11 7 7.0448 -3.1043 -0.6873 12 14 6.9998 -2.7593 -3.4358 13 1 7.9820 -1.6978 -3.7729 14 1 7.6452 -4.0903 -3.5661 15 1 5.8437 -2.6768 -4.3641 16 7 2.3055 -1.1083 -0.0060 17 6 1.8452 -2.4990 -0.0123 18 1 -0.3633 -0.0055 1.0277 19 1 -0.3633 -0.8872 -0.5186 20 1 -0.3633 0.8928 -0.5091 21 1 1.9566 2.1194 -0.0004 22 1 5.6136 -1.0895 0.5828 23 1 4.5653 -2.5189 0.4211 24 1 7.8230 -3.6548 -0.8666 25 1 0.7554 -2.5211 -0.0120 26 1 2.2184 -3.0013 -0.9048 27 1 2.2192 -3.0096 0.8752 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034540542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 12.674531 kcal Electronic energy + Delta-G solvation = -12396.876049 eV Core-core repulsion = 10156.128735 eV Total energy + Delta-G solvation = -2240.747314 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.33587 -38.13003 -35.88008 -34.05693 -32.96568 -30.74685 -27.92823 -26.68537 -24.77659 -21.88652 -20.64266 -18.91964 -18.15076 -16.89247 -16.69555 -16.14756 -15.81903 -14.83650 -14.52974 -14.47738 -14.12482 -13.83853 -13.71421 -13.27233 -13.07243 -12.92233 -12.75872 -12.37948 -12.22996 -11.72196 -10.82240 -10.64146 -9.91093 -8.66137 -8.35529 -6.55784 0.78979 0.89709 1.31707 1.36078 1.46005 2.27414 2.42975 2.90021 2.97389 3.74107 4.04301 4.38767 4.42499 4.57084 4.71398 4.80272 4.87272 4.90415 5.06603 5.16756 5.29625 5.44963 5.63977 5.78248 6.39656 6.54158 6.63805 7.13359 7.49068 8.69217 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044548 B = 0.010946 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.390967 B = 2557.305207 C = 2778.640024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.200 3.800 3 C -0.395 4.395 4 C 0.485 3.515 5 O -0.639 6.639 6 N -0.416 5.416 7 C 0.279 3.721 8 C -0.559 4.559 9 H 0.047 0.953 10 C 0.018 3.982 11 N -0.920 5.920 12 Si 0.975 3.025 13 H -0.279 1.279 14 H -0.264 1.264 15 H -0.265 1.265 16 N -0.383 5.383 17 C 0.092 3.908 18 H 0.113 0.887 19 H 0.102 0.898 20 H 0.109 0.891 21 H 0.169 0.831 22 H 0.012 0.988 23 H 0.043 0.957 24 H 0.274 0.726 25 H 0.154 0.846 26 H 0.065 0.935 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -1.721 0.420 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 C -0.425 4.425 4 C 0.286 3.714 5 O -0.527 6.527 6 N -0.234 5.234 7 C 0.160 3.840 8 C -0.597 4.597 9 H 0.065 0.935 10 C -0.183 4.183 11 N -0.559 5.559 12 Si 0.798 3.202 13 H -0.205 1.205 14 H -0.189 1.189 15 H -0.189 1.189 16 N -0.176 5.176 17 C -0.047 4.047 18 H 0.131 0.869 19 H 0.120 0.880 20 H 0.128 0.872 21 H 0.186 0.814 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.171 0.829 26 H 0.084 0.916 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.288 -1.932 0.482 16.409 hybrid contribution 1.302 -0.029 -0.605 1.436 sum -14.986 -1.961 -0.123 15.115 Atomic orbital electron populations 1.20899 0.81193 1.06461 1.05981 1.21782 0.95888 0.83531 0.90872 1.21669 0.90728 1.00855 1.29288 1.17859 0.92293 0.80551 0.80693 1.90692 1.42955 1.58084 1.60921 1.49215 0.97263 1.07521 1.69408 1.19018 0.79164 0.88560 0.97235 1.21548 1.14269 1.31324 0.92532 0.93505 1.25843 0.95425 0.94289 1.02703 1.70007 1.20321 1.32140 1.33413 0.85309 0.78585 0.78054 0.78232 1.20478 1.18859 1.18896 1.46887 0.94128 1.07587 1.68961 1.22320 1.03313 0.75706 1.03374 0.86906 0.87969 0.87223 0.81353 0.97004 0.93920 0.91682 0.82860 0.91632 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.94 71.24 0.71 -0.39 15 2 C 0.20 5.79 6.94 41.03 0.28 6.07 15 3 C -0.40 -15.34 10.73 22.28 0.24 -15.10 15 4 C 0.49 25.92 7.95 85.02 0.68 26.59 15 5 O -0.64 -40.68 17.92 -4.62 -0.08 -40.77 15 6 N -0.42 -20.88 3.60 -475.88 -1.71 -22.59 15 7 C 0.28 15.92 5.75 85.63 0.49 16.41 15 8 C -0.56 -33.61 9.39 25.60 0.24 -33.37 15 9 H 0.05 2.89 7.81 -2.91 -0.02 2.87 15 10 C 0.02 1.04 5.46 84.65 0.46 1.51 15 11 N -0.92 -54.87 13.29 21.45 0.28 -54.59 15 12 Si 0.98 45.16 29.54 68.60 2.03 47.19 15 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 15 H -0.26 -11.80 7.11 99.48 0.71 -11.10 15 16 N -0.38 -13.53 4.06 -355.15 -1.44 -14.97 15 17 C 0.09 2.20 10.71 127.77 1.37 3.57 15 18 H 0.11 0.93 8.14 -2.39 -0.02 0.91 15 19 H 0.10 0.77 7.09 -2.39 -0.02 0.75 15 20 H 0.11 1.08 8.14 -2.38 -0.02 1.06 15 21 H 0.17 5.62 8.06 -2.91 -0.02 5.60 15 22 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.04 2.33 7.75 -2.38 -0.02 2.31 15 24 H 0.27 15.13 8.31 -92.71 -0.77 14.35 15 25 H 0.15 1.76 6.67 -2.39 -0.02 1.74 15 26 H 0.06 1.79 8.14 -2.38 -0.02 1.77 15 27 H 0.07 1.75 8.14 -2.38 -0.02 1.73 15 Total: -1.00 -85.33 242.98 4.70 -80.63 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 1.16 Total: -0.19 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.47 Total: 5.29 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -2.87 Total: -92.15 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.08 Total: -40.77 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -85.33 4.70 -80.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034540542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.300 kcal (2) G-P(sol) polarization free energy of solvation -85.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds