Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86803 * 120.00382 * 2 1 4 4 H 1.48498 * 109.47060 * 239.99989 * 3 2 1 5 5 H 1.48507 * 109.46729 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47378 * 119.99568 * 3 2 1 7 7 C 1.38698 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34764 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.21801 * 116.99999 * 179.97438 * 9 7 2 11 11 C 1.27982 * 120.00015 * 179.97438 * 10 9 7 12 12 C 1.52239 * 128.06269 * 359.97438 * 11 10 9 13 13 N 1.49531 * 105.58228 * 180.37946 * 12 11 10 14 14 C 1.49966 * 105.66469 * 71.41319 * 13 12 11 15 15 C 1.54686 * 104.90906 * 289.74270 * 14 13 12 16 16 C 1.53842 * 128.06181 * 180.02562 * 11 10 9 17 17 H 1.09001 * 116.61271 * 340.11261 * 16 11 10 18 18 C 1.50535 * 101.58119 * 325.20007 * 13 12 11 19 19 H 0.97004 * 119.99619 * 359.97438 * 1 2 3 20 20 H 1.08994 * 110.22503 * 299.41233 * 12 11 10 21 21 H 1.09003 * 110.22527 * 61.34814 * 12 11 10 22 22 H 1.09004 * 110.36793 * 170.92269 * 14 13 12 23 23 H 1.08996 * 110.44847 * 48.60859 * 14 13 12 24 24 H 1.09002 * 110.68238 * 240.62441 * 15 14 13 25 25 H 1.08999 * 110.67484 * 117.62942 * 15 14 13 26 26 H 1.09006 * 111.96845 * 297.05140 * 18 13 12 27 27 H 1.08993 * 111.97178 * 170.67773 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6963 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2012 0.0005 8 1 3.0889 -1.2012 0.0001 9 8 1.3350 -2.3683 0.0005 10 7 1.9983 -3.3898 0.0005 11 6 1.4172 -4.5301 0.0010 12 6 -0.0769 -4.8222 0.0022 13 7 -0.1947 -6.3128 0.0119 14 6 0.2315 -6.7438 1.3836 15 6 1.7558 -6.4841 1.4267 16 6 2.0659 -5.9251 0.0017 17 1 3.1027 -5.9816 -0.3298 18 6 0.9890 -6.7150 -0.8265 19 1 -0.4850 0.8401 0.0004 20 1 -0.5423 -4.4015 0.8935 21 1 -0.5415 -4.4132 -0.8950 22 1 0.0239 -7.8038 1.5298 23 1 -0.2753 -6.1497 2.1440 24 1 2.2996 -7.4122 1.6029 25 1 1.9990 -5.7460 2.1909 26 1 0.9089 -6.3457 -1.8490 27 1 1.1618 -7.7908 -0.7987 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039082076.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = 51.461529 kcal Electronic energy + Delta-G solvation = -12358.940594 eV Core-core repulsion = 10119.875211 eV Total energy + Delta-G solvation = -2239.065383 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.39593 -39.33917 -33.13170 -31.23741 -30.01149 -28.25893 -26.29392 -24.49996 -21.07819 -20.69687 -18.86224 -18.09093 -16.50941 -15.50094 -15.05988 -14.68736 -14.18355 -14.16556 -13.37868 -12.58998 -11.92617 -11.46615 -11.38612 -11.28301 -11.05387 -11.00823 -10.88394 -10.55604 -10.48513 -10.21002 -9.09387 -9.06516 -7.94648 -7.71040 -6.43081 -4.04887 3.09324 3.15082 3.19850 3.42795 3.93523 4.39363 4.74489 5.02497 5.14301 5.27106 5.36380 5.52109 5.67264 5.73869 5.93612 6.02971 6.10658 6.22615 6.29036 6.42357 6.45825 6.73607 6.97171 7.03093 7.29234 8.01392 8.50044 9.07023 10.38241 10.81658 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.079431 B = 0.008507 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.424336 B = 3290.593949 C = 3413.416479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.039 3.961 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.381 4.381 8 H 0.088 0.912 9 O 0.022 5.978 10 N -0.328 5.328 11 C -0.095 4.095 12 C 0.047 3.953 13 N -0.466 5.466 14 C 0.012 3.988 15 C -0.142 4.142 16 C -0.046 4.046 17 H 0.104 0.896 18 C 0.014 3.986 19 H 0.271 0.729 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -8.948 0.990 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.165 4.165 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.105 0.895 9 O -0.043 6.043 10 N -0.038 5.038 11 C -0.273 4.273 12 C -0.084 4.084 13 N -0.187 5.187 14 C -0.117 4.117 15 C -0.182 4.182 16 C -0.067 4.067 17 H 0.122 0.878 18 C -0.115 4.115 19 H 0.081 0.919 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.994 -8.860 0.793 9.117 hybrid contribution 0.516 1.114 0.347 1.276 sum 2.509 -7.746 1.141 8.222 Atomic orbital electron populations 1.70027 1.05849 1.27870 1.46813 1.25271 0.95963 0.98702 0.96612 0.85649 0.78464 0.79275 0.79138 1.19562 1.20322 1.19583 1.21383 0.91809 0.79220 1.53546 0.89462 1.83425 1.34061 1.09356 1.77434 1.69185 1.33863 0.93660 1.07091 1.24611 0.93402 0.91425 1.17852 1.22562 0.95208 0.88227 1.02414 1.70209 1.34592 1.08283 1.05592 1.23637 0.94225 1.00906 0.92916 1.23166 0.96925 1.00459 0.97657 1.22808 0.98694 0.90481 0.94723 0.87813 1.24500 0.89560 0.99196 0.98269 0.91917 0.90984 0.90273 0.90536 0.90900 0.91592 0.91264 0.89737 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.67 55.48 0.76 -24.77 15 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 15 3 Si 0.95 20.85 29.55 -169.99 -5.02 15.83 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.38 -11.08 10.14 30.90 0.31 -10.76 15 8 H 0.09 2.43 7.83 -52.48 -0.41 2.02 15 9 O 0.02 0.65 9.57 14.96 0.14 0.80 15 10 N -0.33 -8.64 10.53 36.74 0.39 -8.26 15 11 C -0.10 -2.13 6.73 -76.57 -0.52 -2.64 15 12 C 0.05 0.99 6.12 -2.74 -0.02 0.97 15 13 N -0.47 -8.09 6.99 -223.10 -1.56 -9.65 15 14 C 0.01 0.18 6.65 -1.22 -0.01 0.18 15 15 C -0.14 -2.15 6.32 -24.14 -0.15 -2.31 15 16 C -0.05 -0.80 5.35 -86.23 -0.46 -1.26 15 17 H 0.10 1.67 8.14 -51.93 -0.42 1.24 15 18 C 0.01 0.22 6.79 0.47 0.00 0.22 15 19 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 20 H 0.07 1.58 7.69 -51.93 -0.40 1.18 15 21 H 0.08 1.75 8.14 -51.93 -0.42 1.33 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.12 7.71 -51.93 -0.40 0.72 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 1.15 8.03 -51.93 -0.42 0.73 15 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 233.65 15.07 3.52 3.52 Total: -1.00 -30.73 233.65 -6.01 -36.73 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.30 Total: 0.41 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.93 Total: -14.61 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.41 Total: -42.67 kcal Atomic # 8 Polarization: 0.65 SS G_CDS: 0.14 Total: 0.80 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.73 -6.01 -36.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039082076.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.193 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds