Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86803 * 120.00382 * 2 1 4 4 H 1.48498 * 109.47060 * 239.99989 * 3 2 1 5 5 H 1.48507 * 109.46729 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47378 * 119.99568 * 3 2 1 7 7 C 1.38698 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34764 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.21801 * 116.99999 * 179.97438 * 9 7 2 11 11 C 1.27982 * 120.00015 * 179.97438 * 10 9 7 12 12 C 1.52239 * 128.06269 * 359.97438 * 11 10 9 13 13 N 1.49531 * 105.58228 * 180.37946 * 12 11 10 14 14 C 1.49966 * 105.66469 * 71.41319 * 13 12 11 15 15 C 1.54686 * 104.90906 * 289.74270 * 14 13 12 16 16 C 1.53842 * 128.06181 * 180.02562 * 11 10 9 17 17 H 1.09001 * 116.61271 * 340.11261 * 16 11 10 18 18 C 1.50535 * 101.58119 * 325.20007 * 13 12 11 19 19 H 0.97004 * 119.99619 * 359.97438 * 1 2 3 20 20 H 1.08994 * 110.22503 * 299.41233 * 12 11 10 21 21 H 1.09003 * 110.22527 * 61.34814 * 12 11 10 22 22 H 1.09004 * 110.36793 * 170.92269 * 14 13 12 23 23 H 1.08996 * 110.44847 * 48.60859 * 14 13 12 24 24 H 1.09002 * 110.68238 * 240.62441 * 15 14 13 25 25 H 1.08999 * 110.67484 * 117.62942 * 15 14 13 26 26 H 1.09006 * 111.96845 * 297.05140 * 18 13 12 27 27 H 1.08993 * 111.97178 * 170.67773 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6963 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2012 0.0005 8 1 3.0889 -1.2012 0.0001 9 8 1.3350 -2.3683 0.0005 10 7 1.9983 -3.3898 0.0005 11 6 1.4172 -4.5301 0.0010 12 6 -0.0769 -4.8222 0.0022 13 7 -0.1947 -6.3128 0.0119 14 6 0.2315 -6.7438 1.3836 15 6 1.7558 -6.4841 1.4267 16 6 2.0659 -5.9251 0.0017 17 1 3.1027 -5.9816 -0.3298 18 6 0.9890 -6.7150 -0.8265 19 1 -0.4850 0.8401 0.0004 20 1 -0.5423 -4.4015 0.8935 21 1 -0.5415 -4.4132 -0.8950 22 1 0.0239 -7.8038 1.5298 23 1 -0.2753 -6.1497 2.1440 24 1 2.2996 -7.4122 1.6029 25 1 1.9990 -5.7460 2.1909 26 1 0.9089 -6.3457 -1.8490 27 1 1.1618 -7.7908 -0.7987 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039082076.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = 27.684340 kcal Electronic energy + Delta-G solvation = -12359.971650 eV Core-core repulsion = 10119.875211 eV Total energy + Delta-G solvation = -2240.096440 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.11421 -40.99693 -35.14539 -33.16858 -31.42881 -29.65637 -28.02923 -26.47125 -22.63981 -22.04654 -20.51342 -20.13103 -18.19034 -17.05971 -16.83784 -16.54458 -15.97891 -15.74502 -14.90616 -14.01700 -13.77281 -13.13067 -12.88928 -12.76093 -12.69801 -12.64347 -12.30131 -12.16999 -12.10859 -11.54959 -11.06457 -10.70581 -9.74187 -9.67063 -8.51333 -6.23480 1.34619 1.34637 1.52474 1.61564 2.12886 2.92166 2.96233 3.07150 3.77315 3.86068 3.95034 4.04427 4.25896 4.30002 4.51148 4.69477 4.86501 4.91757 4.95798 5.00542 5.05908 5.06455 5.17976 5.54318 5.60933 5.93558 6.56140 6.96524 8.34033 8.77463 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.079431 B = 0.008507 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.424336 B = 3290.593949 C = 3413.416479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.016 4.016 3 Si 1.030 2.970 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.411 4.411 8 H 0.086 0.914 9 O -0.042 6.042 10 N -0.364 5.364 11 C -0.061 4.061 12 C 0.044 3.956 13 N -0.466 5.466 14 C 0.010 3.990 15 C -0.134 4.134 16 C -0.051 4.051 17 H 0.122 0.878 18 C 0.022 3.978 19 H 0.276 0.724 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.117 0.883 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -11.045 1.151 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.214 4.214 3 Si 0.848 3.152 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.104 0.896 9 O -0.094 6.094 10 N -0.083 5.083 11 C -0.243 4.243 12 C -0.088 4.088 13 N -0.187 5.187 14 C -0.118 4.118 15 C -0.174 4.174 16 C -0.072 4.072 17 H 0.140 0.860 18 C -0.107 4.107 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.135 0.865 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.040 -10.893 0.956 11.349 hybrid contribution 0.141 1.382 0.306 1.423 sum 3.181 -9.510 1.261 10.107 Atomic orbital electron populations 1.70158 1.07865 1.29239 1.48628 1.26599 0.97002 1.02416 0.95421 0.84512 0.77231 0.73624 0.79840 1.18298 1.19108 1.18324 1.21790 0.92109 0.80199 1.54735 0.89589 1.83438 1.34687 1.10112 1.81124 1.69265 1.34668 0.94022 1.10383 1.25990 0.95429 0.92649 1.10263 1.22516 0.94125 0.91435 1.00695 1.70221 1.36064 1.04650 1.07748 1.23800 0.94001 1.03019 0.91027 1.23148 0.97376 1.01778 0.95085 1.23206 1.00052 0.86672 0.97244 0.86039 1.24647 0.87191 1.01575 0.97247 0.91472 0.92718 0.92120 0.86501 0.92038 0.87008 0.93414 0.90310 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.57 13.67 21.62 0.30 -56.27 15 2 C -0.02 -0.91 5.49 84.85 0.47 -0.44 15 3 Si 1.03 43.53 29.55 68.60 2.03 45.56 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 7 C -0.41 -25.13 10.14 67.93 0.69 -24.44 15 8 H 0.09 5.02 7.83 -2.91 -0.02 5.00 15 9 O -0.04 -2.62 9.57 63.44 0.61 -2.01 15 10 N -0.36 -19.92 10.53 -37.59 -0.40 -20.31 15 11 C -0.06 -2.75 6.73 48.06 0.32 -2.42 15 12 C 0.04 1.87 6.12 85.54 0.52 2.39 15 13 N -0.47 -14.99 6.99 -859.77 -6.01 -21.01 15 14 C 0.01 0.26 6.65 86.28 0.57 0.84 15 15 C -0.13 -3.53 6.32 32.27 0.20 -3.33 15 16 C -0.05 -1.60 5.35 -7.95 -0.04 -1.64 15 17 H 0.12 3.46 8.14 -2.39 -0.02 3.44 15 18 C 0.02 0.60 6.79 87.05 0.59 1.19 15 19 H 0.28 15.47 8.31 -92.71 -0.77 14.70 15 20 H 0.05 2.50 7.69 -2.39 -0.02 2.49 15 21 H 0.06 2.80 8.14 -2.39 -0.02 2.78 15 22 H 0.12 2.26 8.14 -2.38 -0.02 2.24 15 23 H 0.06 1.78 7.71 -2.39 -0.02 1.76 15 24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.05 1.48 8.03 -2.39 -0.02 1.46 15 26 H 0.08 2.24 8.14 -2.38 -0.02 2.22 15 27 H 0.13 2.42 8.14 -2.39 -0.02 2.40 15 Total: -1.00 -71.59 233.65 1.00 -70.58 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.15 Total: 11.32 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.33 Total: -27.87 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -6.11 Total: -97.59 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.61 Total: -2.01 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.59 1.00 -70.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039082076.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.268 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds