Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 11 11 O 1.42910 * 109.46810 * 60.00317 * 9 7 2 12 12 C 1.52998 * 109.47188 * 180.02562 * 9 7 2 13 13 C 1.53006 * 109.47099 * 175.00145 * 12 9 7 14 14 C 1.50699 * 109.46886 * 180.02562 * 13 12 9 15 15 C 1.34511 * 125.78765 * 89.71912 * 14 13 12 16 16 C 1.41376 * 106.84051 * 179.88713 * 15 14 13 17 17 C 1.34517 * 106.84315 * 0.37338 * 16 15 14 18 18 O 1.34303 * 108.41702 * 359.77034 * 17 16 15 19 19 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 20 20 H 0.96696 * 113.99416 * 59.99927 * 11 9 7 21 21 H 1.09000 * 109.47273 * 295.00564 * 12 9 7 22 22 H 1.09003 * 109.47039 * 55.00593 * 12 9 7 23 23 H 1.08998 * 109.46892 * 300.00313 * 13 12 9 24 24 H 1.09003 * 109.46810 * 60.00308 * 13 12 9 25 25 H 1.08005 * 126.58055 * 0.02562 * 15 14 13 26 26 H 1.08010 * 126.58008 * 180.16376 * 16 15 14 27 27 H 1.07996 * 125.78951 * 179.79607 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 6 1.4846 -4.9836 0.1252 14 6 2.4640 -6.1289 0.1258 15 6 3.0511 -6.6612 1.2126 16 6 3.8862 -7.7068 0.7563 17 6 3.7658 -7.7455 -0.5829 18 8 2.9031 -6.7874 -0.9592 19 1 -0.4849 -0.8401 -0.0004 20 1 0.9211 -2.5290 -1.9984 21 1 2.8117 -3.6559 -0.9319 22 1 2.9295 -3.5552 0.8414 23 1 0.9183 -4.9896 1.0565 24 1 0.8005 -5.0904 -0.7167 25 1 2.9098 -6.3511 2.2375 26 1 4.5050 -8.3489 1.3658 27 1 4.2761 -8.4309 -1.2433 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041167898.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = -80.964268 kcal Electronic energy + Delta-G solvation = -11978.625855 eV Core-core repulsion = 9701.525307 eV Total energy + Delta-G solvation = -2277.100548 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.47954 -38.53700 -34.83894 -34.25533 -33.66382 -30.41873 -27.76708 -25.09059 -22.67519 -22.62963 -21.28755 -19.41209 -18.13111 -17.22034 -16.63940 -16.36431 -15.76451 -15.55847 -14.61490 -14.33051 -14.18711 -13.73973 -13.47679 -13.08686 -12.86729 -12.62650 -12.15794 -11.93134 -11.85815 -11.22424 -10.86115 -10.63027 -10.16178 -9.33933 -8.61240 -6.46754 0.80655 1.53250 1.61528 1.70452 1.79697 2.12772 2.56400 3.16329 3.74834 3.94666 4.05047 4.14110 4.29114 4.35949 4.47804 4.73511 4.83913 4.94653 5.03610 5.16256 5.28946 5.49242 5.63670 5.87237 6.13689 6.23203 6.57066 7.15592 7.49549 8.76248 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.069597 B = 0.007354 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.217251 B = 3806.301850 C = 3970.256561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.118 2.882 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.662 4.662 8 H 0.048 0.952 9 C 0.208 3.792 10 H 0.028 0.972 11 O -0.592 6.592 12 C -0.112 4.112 13 C -0.031 4.031 14 C -0.023 4.023 15 C -0.227 4.227 16 C -0.223 4.223 17 C -0.050 4.050 18 O -0.197 6.197 19 H 0.269 0.731 20 H 0.364 0.636 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.174 0.826 27 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -12.735 0.126 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.699 4.699 8 H 0.067 0.933 9 C 0.151 3.849 10 H 0.046 0.954 11 O -0.398 6.398 12 C -0.150 4.150 13 C -0.068 4.068 14 C -0.072 4.072 15 C -0.246 4.246 16 C -0.242 4.242 17 C -0.117 4.117 18 O -0.094 6.094 19 H 0.079 0.921 20 H 0.211 0.789 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.095 0.905 25 H 0.172 0.828 26 H 0.191 0.809 27 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.953 -11.114 0.297 13.113 hybrid contribution 0.539 -1.686 -0.090 1.772 sum 7.493 -12.800 0.207 14.833 Atomic orbital electron populations 1.70756 1.07986 1.31305 1.45697 1.27311 0.96526 1.06493 0.91657 0.82940 0.74139 0.71242 0.77735 1.19826 1.19596 1.20950 1.22903 0.94656 0.94025 1.58320 0.93326 1.19485 0.88535 0.92282 0.84612 0.95429 1.86404 1.40007 1.96590 1.16779 1.21977 0.98317 0.93331 1.01361 1.20064 0.94425 0.88383 1.03969 1.22691 1.01813 0.97904 0.84835 1.21904 1.02303 1.00537 0.99869 1.22179 1.04517 1.01984 0.95493 1.24862 0.95797 0.93962 0.97046 1.84015 1.49563 1.39882 1.35965 0.92086 0.78947 0.92944 0.92147 0.88850 0.90545 0.82796 0.80882 0.74346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.53 21.45 0.29 -56.90 15 2 C -0.02 -1.03 5.40 84.65 0.46 -0.57 15 3 Si 1.12 50.06 29.90 68.60 2.05 52.11 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 7 C -0.66 -37.19 8.76 25.60 0.22 -36.97 15 8 H 0.05 2.69 7.74 -2.91 -0.02 2.66 15 9 C 0.21 10.57 2.43 29.85 0.07 10.64 15 10 H 0.03 1.53 8.01 -2.38 -0.02 1.51 15 11 O -0.59 -29.97 11.55 -148.98 -1.72 -31.69 15 12 C -0.11 -4.63 4.81 30.60 0.15 -4.49 15 13 C -0.03 -1.11 5.65 29.85 0.17 -0.94 15 14 C -0.02 -0.74 6.57 24.83 0.16 -0.58 15 15 C -0.23 -6.56 10.81 22.19 0.24 -6.32 15 16 C -0.22 -5.26 10.91 22.19 0.24 -5.02 15 17 C -0.05 -1.15 12.09 66.97 0.81 -0.35 15 18 O -0.20 -6.17 10.65 -2.49 -0.03 -6.19 15 19 H 0.27 17.11 6.47 -92.71 -0.60 16.51 15 20 H 0.36 16.54 9.04 -74.06 -0.67 15.87 15 21 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.09 3.13 8.14 -2.39 -0.02 3.12 15 24 H 0.08 2.77 7.82 -2.39 -0.02 2.75 15 25 H 0.15 4.02 8.06 -2.91 -0.02 4.00 15 26 H 0.17 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.24 3.07 8.06 -2.91 -0.02 3.05 15 Total: -1.00 -67.33 242.07 3.78 -63.55 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.66 Total: 23.72 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 2.52 Total: -44.60 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.29 Total: -56.90 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.75 Total: -37.89 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -67.33 3.78 -63.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167898.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.412 kcal (2) G-P(sol) polarization free energy of solvation -67.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds