Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.50708 * 109.47025 * 240.00431 * 2 1 3 5 5 H 1.07995 * 119.99482 * 240.00106 * 4 2 1 6 6 C 1.37873 * 119.99667 * 59.99746 * 4 2 1 7 7 N 1.31510 * 120.00667 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99643 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99922 * 8 6 4 11 11 H 1.48501 * 109.46950 * 239.99884 * 8 6 4 12 12 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 13 13 H 1.09002 * 109.47153 * 59.99783 * 12 2 1 14 14 O 1.42898 * 109.47319 * 180.02562 * 12 2 1 15 15 C 1.50699 * 109.47078 * 299.99990 * 12 2 1 16 16 C 1.34510 * 125.79218 * 99.99908 * 15 12 2 17 17 C 1.41379 * 106.84350 * 180.02562 * 16 15 12 18 18 C 1.34510 * 106.84213 * 0.02562 * 17 16 15 19 19 O 1.34308 * 125.78641 * 279.69418 * 15 12 2 20 20 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 21 21 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 22 22 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00396 * 179.97438 * 7 6 4 24 24 H 0.96698 * 113.99898 * 59.99520 * 14 12 2 25 25 H 1.08006 * 126.57549 * 359.96331 * 16 15 12 26 26 H 1.07998 * 126.58113 * 180.02562 * 17 16 15 27 27 H 1.08002 * 125.79136 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 3.1463 -2.2868 -3.6039 10 1 1.1659 -1.5864 -4.8162 11 1 3.1463 -0.1870 -4.8166 12 6 2.0400 -0.7213 1.2492 13 1 1.6767 -1.7490 1.2492 14 8 3.4690 -0.7207 1.2494 15 6 1.5377 -0.0109 2.4797 16 6 0.4875 -0.3868 3.2314 17 6 0.3730 0.5580 4.2769 18 6 1.3598 1.4551 4.1012 19 8 2.0663 1.1016 3.0150 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7085 1.1614 -3.4844 24 1 3.8619 0.1628 1.2496 25 1 -0.1472 -1.2451 3.0671 26 1 -0.3651 0.5593 5.0653 27 1 1.5547 2.3110 4.7304 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049804819.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = -45.175989 kcal Electronic energy + Delta-G solvation = -12453.833016 eV Core-core repulsion = 10178.284364 eV Total energy + Delta-G solvation = -2275.548652 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.12391 -36.86950 -33.61762 -32.58835 -31.03935 -28.84398 -25.14418 -24.59483 -21.36512 -20.71243 -19.58956 -17.55358 -16.28577 -15.57073 -15.34760 -14.59054 -14.16785 -13.67274 -12.70171 -12.56289 -12.38858 -12.14415 -11.54483 -11.13971 -10.95882 -10.68100 -10.43330 -10.13072 -10.09025 -9.50279 -9.04752 -8.86229 -8.36620 -7.89745 -6.00079 -4.06398 2.19644 3.04504 3.30749 3.38605 3.43192 3.46738 4.44133 5.12509 5.24156 5.34246 5.42428 5.50054 6.06200 6.17665 6.37026 6.37840 6.52734 6.86147 6.91174 7.05877 7.18404 7.56386 7.69158 7.86068 8.07248 8.33952 8.42138 8.98273 9.58342 11.06189 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.064885 B = 0.009889 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.429842 B = 2830.651914 C = 2998.385213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.021 3.979 3 H 0.031 0.969 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.190 3.810 13 H 0.114 0.886 14 O -0.552 6.552 15 C -0.007 4.007 16 C -0.225 4.225 17 C -0.212 4.212 18 C -0.062 4.062 19 O -0.174 6.174 20 H 0.012 0.988 21 H 0.085 0.915 22 H 0.027 0.973 23 H 0.259 0.741 24 H 0.373 0.627 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 0.264 9.547 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 H 0.049 0.951 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.130 3.870 13 H 0.131 0.869 14 O -0.357 6.357 15 C -0.058 4.058 16 C -0.244 4.244 17 C -0.232 4.232 18 C -0.130 4.130 19 O -0.070 6.070 20 H 0.032 0.968 21 H 0.104 0.896 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.219 0.781 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.243 -0.128 9.291 9.295 hybrid contribution -0.081 0.242 -0.631 0.680 sum -0.325 0.114 8.660 8.667 Atomic orbital electron populations 1.21785 0.97846 0.99273 1.00702 1.19360 0.93681 0.96174 0.90585 0.95102 1.21106 1.30815 1.12649 0.89792 0.91846 1.24963 0.95071 0.95027 0.99080 1.69906 1.36888 1.23065 1.23277 0.86489 0.78586 0.79764 0.82897 1.19631 1.21114 1.21087 1.21046 0.80406 0.98217 0.87289 0.86875 1.86470 1.19027 1.33489 1.96666 1.24154 0.96229 0.87219 0.98166 1.21488 1.01623 1.03599 0.97673 1.21736 1.01950 0.97502 1.01987 1.23875 0.95534 1.02265 0.91300 1.83998 1.49574 1.37661 1.35765 0.96848 0.89611 0.95356 0.93073 0.78066 0.83873 0.84061 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.66 37.15 0.32 -3.01 15 2 C 0.02 0.51 2.07 -91.77 -0.19 0.32 15 3 H 0.03 0.84 8.14 -51.93 -0.42 0.41 15 4 C -0.51 -13.81 8.23 -34.44 -0.28 -14.10 15 5 H 0.06 1.75 7.70 -52.49 -0.40 1.34 15 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 15 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 15 8 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 9 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 12 C 0.19 4.05 2.97 -27.88 -0.08 3.96 15 13 H 0.11 2.36 8.13 -51.93 -0.42 1.94 15 14 O -0.55 -11.67 12.92 -37.57 -0.49 -12.16 15 15 C -0.01 -0.13 5.20 -35.63 -0.19 -0.31 15 16 C -0.22 -3.95 10.06 -39.71 -0.40 -4.35 15 17 C -0.21 -3.25 10.91 -39.71 -0.43 -3.68 15 18 C -0.06 -0.94 12.09 29.41 0.36 -0.59 15 19 O -0.17 -3.23 10.58 3.33 0.04 -3.20 15 20 H 0.01 0.29 6.71 -51.93 -0.35 -0.06 15 21 H 0.09 2.30 6.07 -51.93 -0.32 1.98 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.37 6.93 8.97 45.56 0.41 7.34 15 25 H 0.14 2.30 8.06 -52.48 -0.42 1.87 15 26 H 0.14 1.73 8.06 -52.49 -0.42 1.30 15 27 H 0.20 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 237.50 15.07 3.58 3.58 Total: -1.00 -30.02 237.50 -4.58 -34.61 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.33 Total: 5.95 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.99 Total: -20.21 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.45 Total: -15.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.02 -4.58 -34.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804819.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds