Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.36877 * 126.39907 * 265.02713 * 11 10 9 13 13 C 1.34669 * 106.81993 * 180.02562 * 12 11 10 14 14 N 1.34132 * 108.01768 * 359.97438 * 13 12 11 15 15 C 1.30503 * 109.25579 * 359.73289 * 14 13 12 16 16 C 1.50698 * 125.64757 * 180.29064 * 15 14 13 17 17 O 1.42897 * 109.47059 * 270.17224 * 16 15 14 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.07997 * 126.58889 * 0.03216 * 12 11 10 24 24 H 1.07998 * 125.99339 * 180.02562 * 13 12 11 25 25 H 1.08998 * 109.47353 * 30.17154 * 16 15 14 26 26 H 1.08999 * 109.47119 * 150.17007 * 16 15 14 27 27 H 0.96701 * 114.00153 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1896 -5.6817 1.0991 13 6 0.5216 -6.7614 0.6500 14 7 0.4386 -6.6719 -0.6858 15 6 1.0248 -5.5749 -1.0809 16 6 1.1414 -5.1066 -2.5085 17 8 2.3405 -5.6285 -3.0845 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8718 -3.6044 -0.8895 22 1 2.8718 -3.6044 0.8904 23 1 1.4250 -5.4523 2.1278 24 1 0.1221 -7.5590 1.2586 25 1 0.2815 -5.4592 -3.0780 26 1 1.1711 -4.0173 -2.5323 27 1 2.4813 -5.3666 -4.0047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051003859.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -23.685739 kcal Electronic energy + Delta-G solvation = -12108.543061 eV Core-core repulsion = 9866.219048 eV Total energy + Delta-G solvation = -2242.324013 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.02026 -37.71873 -36.44576 -34.53348 -31.56267 -31.10062 -27.26919 -26.64525 -23.54843 -22.27988 -20.66806 -18.82345 -18.51397 -17.64507 -16.67379 -16.08567 -15.83725 -15.42398 -14.86038 -14.51064 -14.40268 -14.15717 -13.45762 -12.92824 -12.82074 -12.66965 -12.14926 -11.98479 -11.50393 -11.15852 -10.98452 -10.62590 -10.45705 -9.39831 -8.27027 -6.40866 1.05811 1.42364 1.44348 1.52564 1.92228 2.10302 2.39831 3.07913 3.26143 3.82296 3.93255 3.97389 4.33041 4.39481 4.39956 4.58391 4.62376 4.80348 5.23237 5.32432 5.54038 5.67320 5.86369 6.00588 6.25695 6.74372 6.83540 7.10585 7.30378 8.84724 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.046921 B = 0.008948 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.600469 B = 3128.493244 C = 3412.751297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.025 3.975 10 C 0.116 3.884 11 N -0.442 5.442 12 C -0.055 4.055 13 C -0.052 4.052 14 N -0.513 5.513 15 C 0.174 3.826 16 C 0.167 3.833 17 O -0.581 6.581 18 H 0.266 0.734 19 H -0.006 1.006 20 H -0.003 1.003 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.200 0.800 24 H 0.197 0.803 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -6.600 -1.899 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.091 0.909 9 C -0.013 4.013 10 C -0.005 4.005 11 N -0.123 5.123 12 C -0.190 4.190 13 C -0.201 4.201 14 N -0.234 5.234 15 C -0.088 4.088 16 C 0.088 3.912 17 O -0.390 6.390 18 H 0.074 0.926 19 H 0.012 0.988 20 H 0.016 0.984 21 H 0.109 0.891 22 H 0.117 0.883 23 H 0.216 0.784 24 H 0.214 0.786 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.853 -7.165 -1.869 8.347 hybrid contribution 0.259 1.708 0.174 1.736 sum 4.113 -5.457 -1.695 7.041 Atomic orbital electron populations 1.70099 1.08023 1.28196 1.50692 1.25961 0.95650 1.03492 0.94196 0.85428 0.78155 0.77636 0.79416 1.18825 1.21219 1.18994 1.21422 0.93911 0.91111 1.51961 0.90919 1.19220 0.94119 0.92233 0.95689 1.22126 0.94669 0.79287 1.04424 1.45838 1.40391 1.19023 1.07037 1.23337 1.06662 0.94977 0.94011 1.22774 1.05540 1.00933 0.90830 1.70111 1.21936 1.17762 1.13586 1.23199 1.01671 0.92148 0.91762 1.20143 0.88921 0.96922 0.85257 1.86446 1.42036 1.76898 1.33574 0.92567 0.98811 0.98418 0.89097 0.88257 0.78351 0.78573 0.89293 0.91604 0.74232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 15 2 C 0.01 0.32 5.46 84.66 0.46 0.78 15 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 15 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 7 C -0.55 -28.64 9.11 25.60 0.23 -28.41 15 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 15 9 C 0.03 1.25 5.30 29.85 0.16 1.40 15 10 C 0.12 4.55 5.61 86.38 0.48 5.04 15 11 N -0.44 -17.04 2.75 -514.30 -1.41 -18.46 15 12 C -0.06 -1.87 11.58 83.09 0.96 -0.91 15 13 C -0.05 -1.78 11.87 83.52 0.99 -0.79 15 14 N -0.51 -20.31 11.25 -188.13 -2.12 -22.43 15 15 C 0.17 6.82 7.53 138.13 1.04 7.86 15 16 C 0.17 5.42 7.20 71.24 0.51 5.93 15 17 O -0.58 -16.98 13.64 -148.98 -2.03 -19.01 15 18 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 19 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 20 H 0.00 -0.14 7.63 -2.39 -0.02 -0.16 15 21 H 0.09 3.41 7.94 -2.39 -0.02 3.39 15 22 H 0.10 3.53 8.13 -2.39 -0.02 3.52 15 23 H 0.20 5.32 8.06 -2.91 -0.02 5.30 15 24 H 0.20 5.11 8.06 -2.91 -0.02 5.09 15 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.07 2.19 7.33 -2.39 -0.02 2.17 15 27 H 0.41 6.96 9.12 -74.06 -0.68 6.29 15 Total: -1.00 -68.18 244.06 2.08 -66.09 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.49 Total: 13.41 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.84 Total: -9.10 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.25 Total: -95.00 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -2.03 Total: -19.01 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.18 2.08 -66.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051003859.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.407 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds