Wall clock time and date at job start Mon Mar 30 2020 02:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.30450 * 126.07273 * 90.02148 * 5 4 3 7 7 O 1.21273 * 110.68588 * 180.02562 * 6 5 4 8 8 C 1.34757 * 109.53374 * 0.02562 * 7 6 5 9 9 C 1.40340 * 126.79174 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99679 * 179.97438 * 9 8 7 11 11 C 1.40458 * 120.00457 * 359.96885 * 9 8 7 12 12 N 1.30510 * 119.99850 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46978 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46874 * 120.00012 * 13 11 9 16 16 H 1.48500 * 109.47002 * 240.00175 * 13 11 9 17 17 N 1.33330 * 106.40930 * 359.73353 * 8 7 6 18 18 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 19 19 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 20 20 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 21 21 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 22 22 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 24 24 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 27 27 H 0.97004 * 119.99883 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3281 3.5882 1.0541 7 8 4.7174 4.6906 0.7318 8 6 4.7491 4.7821 -0.6123 9 6 5.1427 5.8960 -1.3698 10 1 5.1258 5.8486 -2.4487 11 6 5.5585 7.0725 -0.7250 12 7 5.5793 7.1297 0.5787 13 14 6.0818 8.5554 -1.7335 14 1 5.9676 8.2360 -3.1792 15 1 5.2032 9.7083 -1.4108 16 1 7.4898 8.9007 -1.4120 17 7 4.3386 3.6029 -1.0799 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6765 1.9564 -0.8900 24 1 1.6764 1.9564 0.8900 25 1 3.9329 0.9289 0.8909 26 1 3.9336 0.9287 -0.8892 27 1 5.8669 7.9421 1.0240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057340908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:24 Heat of formation + Delta-G solvation = 19.000832 kcal Electronic energy + Delta-G solvation = -11944.019750 eV Core-core repulsion = 9703.546765 eV Total energy + Delta-G solvation = -2240.472985 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.95765 -35.78493 -34.07803 -33.40695 -30.96323 -29.02177 -26.44535 -24.18411 -21.53430 -20.96845 -20.28045 -17.51396 -15.72958 -15.41974 -15.30948 -14.74486 -13.68237 -13.56882 -13.16868 -12.72673 -12.05116 -11.64580 -11.56049 -11.46884 -11.07208 -11.02143 -10.67628 -10.45669 -10.25677 -9.98412 -9.90338 -9.40446 -8.85023 -8.20161 -7.05930 -4.98931 2.79476 2.97395 3.05168 3.32407 3.75381 3.95100 4.96875 5.07307 5.17075 5.32855 5.38572 5.54532 5.60486 5.95092 5.98427 6.00000 6.06648 6.21027 6.33756 6.40821 6.69442 6.80757 6.87981 7.49566 7.94151 8.15554 8.36705 8.50785 9.93594 10.44875 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.082177 B = 0.007321 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.647477 B = 3823.893987 C = 3941.867390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.015 4.015 5 C 0.159 3.841 6 N -0.474 5.474 7 O 0.044 5.956 8 C 0.300 3.700 9 C -0.417 4.417 10 H 0.112 0.888 11 C 0.070 3.930 12 N -0.765 5.765 13 Si 0.936 3.064 14 H -0.255 1.255 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.614 5.614 18 H 0.050 0.950 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -4.431 -1.448 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.054 4.054 5 C -0.115 4.115 6 N -0.203 5.203 7 O -0.003 6.003 8 C 0.109 3.891 9 C -0.455 4.455 10 H 0.130 0.870 11 C -0.154 4.154 12 N -0.392 5.392 13 Si 0.759 3.241 14 H -0.179 1.179 15 H -0.194 1.194 16 H -0.194 1.194 17 N -0.358 5.358 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.959 -4.848 -0.793 6.309 hybrid contribution 0.337 0.917 -0.353 1.038 sum -3.622 -3.932 -1.146 5.467 Atomic orbital electron populations 1.21765 0.96162 1.01065 1.01870 1.21526 0.95603 0.97047 1.01808 1.21528 0.94608 0.96230 1.02568 1.19614 0.94978 0.88518 1.02287 1.24971 1.01360 0.98768 0.86410 1.74297 1.25831 0.95328 1.24890 1.85521 1.65352 1.24825 1.24566 1.24265 0.91005 0.93198 0.80594 1.18600 1.39665 0.92535 0.94709 0.86973 1.26202 0.92985 1.00869 0.95393 1.69651 1.30913 1.29285 1.09374 0.85794 0.78867 0.78896 0.80591 1.17858 1.19372 1.19369 1.72223 1.32378 1.03503 1.27747 0.93095 0.92853 0.92762 0.92012 0.92148 0.91625 0.92052 0.91068 0.90495 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 15 2 C -0.12 -1.59 5.93 -26.73 -0.16 -1.75 15 3 C -0.11 -1.88 5.20 -26.73 -0.14 -2.02 15 4 C -0.01 -0.29 5.84 -27.88 -0.16 -0.45 15 5 C 0.16 4.12 7.43 -156.78 -1.17 2.96 15 6 N -0.47 -13.36 12.15 31.51 0.38 -12.98 15 7 O 0.04 1.31 9.74 15.12 0.15 1.46 15 8 C 0.30 8.79 7.82 -16.35 -0.13 8.66 15 9 C -0.42 -11.26 9.48 -37.96 -0.36 -11.62 15 10 H 0.11 2.86 7.85 -52.48 -0.41 2.44 15 11 C 0.07 1.73 5.50 -17.28 -0.10 1.63 15 12 N -0.76 -19.81 12.06 55.57 0.67 -19.14 15 13 Si 0.94 17.81 29.56 -169.99 -5.03 12.78 15 14 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 15 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 17 N -0.61 -17.34 11.61 -11.51 -0.13 -17.47 15 18 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 27 H 0.29 6.63 8.29 -40.82 -0.34 6.30 15 LS Contribution 242.98 15.07 3.66 3.66 Total: -1.00 -30.55 242.98 -5.49 -36.04 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.35 Total: -0.39 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.84 Total: -3.96 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.92 Total: -49.59 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.15 Total: 1.46 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.55 -5.49 -36.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057340908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.037 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds