Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.30450 * 126.07273 * 90.02148 * 5 4 3 7 7 O 1.21273 * 110.68588 * 180.02562 * 6 5 4 8 8 C 1.34757 * 109.53374 * 0.02562 * 7 6 5 9 9 C 1.40340 * 126.79174 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99679 * 179.97438 * 9 8 7 11 11 C 1.40458 * 120.00457 * 359.96885 * 9 8 7 12 12 N 1.30510 * 119.99850 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46978 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46874 * 120.00012 * 13 11 9 16 16 H 1.48500 * 109.47002 * 240.00175 * 13 11 9 17 17 N 1.33330 * 106.40930 * 359.73353 * 8 7 6 18 18 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 19 19 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 20 20 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 21 21 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 22 22 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 24 24 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 27 27 H 0.97004 * 119.99883 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3281 3.5882 1.0541 7 8 4.7174 4.6906 0.7318 8 6 4.7491 4.7821 -0.6123 9 6 5.1427 5.8960 -1.3698 10 1 5.1258 5.8486 -2.4487 11 6 5.5585 7.0725 -0.7250 12 7 5.5793 7.1297 0.5787 13 14 6.0818 8.5554 -1.7335 14 1 5.9676 8.2360 -3.1792 15 1 5.2032 9.7083 -1.4108 16 1 7.4898 8.9007 -1.4120 17 7 4.3386 3.6029 -1.0799 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6765 1.9564 -0.8900 24 1 1.6764 1.9564 0.8900 25 1 3.9329 0.9289 0.8909 26 1 3.9336 0.9287 -0.8892 27 1 5.8669 7.9421 1.0240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057340908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -2.041537 kcal Electronic energy + Delta-G solvation = -11944.932216 eV Core-core repulsion = 9703.546765 eV Total energy + Delta-G solvation = -2241.385450 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.04192 -37.24279 -36.08083 -35.21589 -32.80396 -30.61443 -28.51836 -25.61277 -23.61211 -22.44497 -21.92270 -19.48989 -17.85396 -17.37222 -16.92425 -16.27161 -15.31942 -14.90552 -14.68652 -14.07188 -13.63617 -13.49002 -13.17707 -13.09072 -12.41638 -12.35533 -12.05077 -11.95529 -11.87039 -11.75952 -11.47405 -11.29046 -10.98091 -10.27929 -8.96769 -7.11109 0.97712 1.40375 1.54058 1.62450 2.01985 2.15077 3.00202 3.24341 3.51302 3.88189 4.07348 4.20502 4.26891 4.59072 4.60731 4.76888 4.92573 4.93967 5.01338 5.09544 5.25398 5.37048 5.46010 5.56604 5.86728 6.07465 6.29541 6.44134 8.05954 8.31303 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.082177 B = 0.007321 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.647477 B = 3823.893987 C = 3941.867390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.015 4.015 5 C 0.166 3.834 6 N -0.502 5.502 7 O 0.009 5.991 8 C 0.267 3.733 9 C -0.434 4.434 10 H 0.122 0.878 11 C 0.027 3.973 12 N -0.796 5.796 13 Si 1.024 2.976 14 H -0.247 1.247 15 H -0.256 1.256 16 H -0.256 1.256 17 N -0.640 5.640 18 H 0.073 0.927 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -4.222 -2.359 6.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.141 4.141 4 C -0.054 4.054 5 C -0.108 4.108 6 N -0.238 5.238 7 O -0.032 6.032 8 C 0.078 3.922 9 C -0.471 4.471 10 H 0.140 0.860 11 C -0.195 4.195 12 N -0.423 5.423 13 Si 0.840 3.160 14 H -0.170 1.170 15 H -0.180 1.180 16 H -0.180 1.180 17 N -0.386 5.386 18 H 0.092 0.908 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.963 -4.627 -1.691 6.322 hybrid contribution 0.347 0.857 -0.052 0.926 sum -3.616 -3.770 -1.743 5.507 Atomic orbital electron populations 1.21764 0.94940 1.02484 1.01620 1.21484 0.96610 0.93982 1.03098 1.21467 0.92638 0.98995 1.01041 1.19926 0.96637 0.84976 1.03854 1.26004 0.98940 1.00594 0.85291 1.74233 1.28166 0.95503 1.25868 1.85457 1.66961 1.25869 1.24924 1.24912 0.91963 0.94418 0.80877 1.19179 1.39476 0.93147 0.95335 0.86038 1.27438 0.91877 1.03614 0.96547 1.69704 1.30044 1.31099 1.11499 0.84545 0.78926 0.73849 0.78674 1.16993 1.18031 1.18012 1.72219 1.33865 1.03807 1.28693 0.90815 0.93159 0.93069 0.90726 0.90835 0.93231 0.93550 0.89324 0.88942 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.43 15 2 C -0.11 -2.71 5.93 30.60 0.18 -2.53 15 3 C -0.10 -3.42 5.20 30.60 0.16 -3.26 15 4 C -0.02 -0.58 5.84 29.85 0.17 -0.40 15 5 C 0.17 8.78 7.43 138.61 1.03 9.81 15 6 N -0.50 -29.21 12.15 -56.64 -0.69 -29.89 15 7 O 0.01 0.54 9.74 64.19 0.63 1.16 15 8 C 0.27 16.09 7.82 85.06 0.66 16.75 15 9 C -0.43 -23.70 9.48 23.32 0.22 -23.48 15 10 H 0.12 6.19 7.85 -2.91 -0.02 6.17 15 11 C 0.03 1.31 5.50 85.43 0.47 1.78 15 12 N -0.80 -41.39 12.06 21.91 0.26 -41.13 15 13 Si 1.02 35.00 29.56 68.60 2.03 37.03 15 14 H -0.25 -8.07 7.11 99.48 0.71 -7.37 15 15 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 16 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 17 N -0.64 -37.02 11.61 -305.23 -3.54 -40.57 15 18 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 19 H 0.05 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.09 3.25 8.14 -2.39 -0.02 3.23 15 27 H 0.31 13.78 8.29 -92.71 -0.77 13.01 15 Total: -1.00 -67.68 242.98 3.46 -64.22 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.15 Total: 12.93 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 3.61 Total: -3.76 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -3.97 Total: -111.59 kcal Atomic # 8 Polarization: 0.54 SS G_CDS: 0.63 Total: 1.16 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -67.68 3.46 -64.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057340908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.182 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds