Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47108 * 89.97374 * 8 7 6 10 10 H 1.08002 * 120.00371 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00126 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99981 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00383 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47020 * 59.99721 * 13 11 9 15 15 H 1.48502 * 109.47250 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47050 * 299.99833 * 13 11 9 17 17 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 18 18 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 19 19 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 20 20 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 22 22 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 23 23 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 24 24 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 26 26 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 27 27 H 0.96997 * 119.99944 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 6 2.9371 -4.4504 3.2681 10 1 1.8883 -4.3893 3.0179 11 6 3.4625 -5.6293 3.7530 12 7 4.7397 -5.7036 4.0583 13 14 2.3605 -7.1210 3.9763 14 1 1.7721 -7.5021 2.6673 15 1 3.1617 -8.2533 4.5068 16 1 1.2720 -6.7936 4.9319 17 8 2.8035 -1.8104 1.2544 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1299 1.4425 0.0005 25 1 4.6251 -3.4868 2.3870 26 1 4.2579 -2.9674 4.0495 27 1 5.1092 -6.5329 4.3997 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058518033.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = 11.663235 kcal Electronic energy + Delta-G solvation = -12023.582972 eV Core-core repulsion = 9782.791806 eV Total energy + Delta-G solvation = -2240.791167 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.39303 -35.81280 -35.29896 -33.57197 -30.89543 -27.72690 -27.25191 -24.08211 -23.62478 -21.25930 -20.42235 -16.99115 -16.58170 -16.01687 -15.04501 -14.75196 -14.36366 -13.24539 -13.19842 -12.40389 -12.25435 -12.10093 -11.66513 -11.59494 -11.34314 -11.24052 -11.07243 -10.95461 -10.82087 -10.28892 -9.98526 -9.80771 -8.61628 -8.56067 -6.24867 -4.30891 1.98202 3.02631 3.19284 3.25558 3.29203 3.34476 4.30183 4.47722 4.83867 4.99319 5.10862 5.17063 5.48683 5.54474 5.60654 5.75844 5.83159 6.00971 6.15689 6.17298 6.38433 6.56351 7.12015 7.21013 7.68230 7.92634 8.69037 9.14712 9.33824 10.85411 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.063229 B = 0.008123 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.727826 B = 3446.229510 C = 3638.954360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.010 3.990 3 C -0.142 4.142 4 C 0.121 3.879 5 N -0.288 5.288 6 N -0.320 5.320 7 C 0.221 3.779 8 C 0.104 3.896 9 C -0.525 4.525 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.889 5.889 13 Si 0.907 3.093 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.273 1.273 17 O -0.230 6.230 18 H 0.069 0.931 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.095 0.905 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 8.574 -8.627 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.010 4.010 3 C -0.200 4.200 4 C -0.091 4.091 5 N -0.135 5.135 6 N -0.166 5.166 7 C 0.012 3.988 8 C 0.066 3.934 9 C -0.564 4.564 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.734 3.266 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.198 1.198 17 O -0.109 6.109 18 H 0.088 0.912 19 H 0.088 0.912 20 H 0.078 0.922 21 H 0.113 0.887 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.850 9.095 -7.510 12.753 hybrid contribution -0.050 -1.551 -0.801 1.746 sum -4.900 7.544 -8.311 12.247 Atomic orbital electron populations 1.21844 0.92467 1.02834 1.02986 1.19514 0.96519 0.94998 0.89943 1.21835 1.01487 0.93675 1.03028 1.27639 0.96016 0.87437 0.98051 1.74141 1.18948 1.21885 0.98531 1.74394 1.12045 1.03756 1.26370 1.29499 0.96125 0.97684 0.75474 1.18173 0.93131 0.84892 0.97219 1.20785 0.95391 0.94512 1.45700 0.92186 1.24940 0.95342 0.98886 0.94569 1.69919 1.11962 1.27743 1.43008 0.86396 0.80262 0.81166 0.78775 1.19980 1.20874 1.19835 1.84815 1.54682 1.38915 1.32536 0.91241 0.91175 0.92191 0.88700 0.91172 0.91239 0.92299 0.92907 0.91160 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 37.16 0.34 -1.29 15 2 C 0.01 0.14 3.39 -91.77 -0.31 -0.18 15 3 C -0.14 -1.54 9.18 37.16 0.34 -1.20 15 4 C 0.12 2.30 6.99 -12.94 -0.09 2.21 15 5 N -0.29 -6.24 12.22 32.55 0.40 -5.84 15 6 N -0.32 -7.81 12.22 32.55 0.40 -7.42 15 7 C 0.22 5.36 7.67 -12.94 -0.10 5.26 15 8 C 0.10 2.70 5.60 -29.04 -0.16 2.53 15 9 C -0.53 -14.68 9.09 -34.44 -0.31 -15.00 15 10 H 0.06 1.69 7.74 -52.49 -0.41 1.29 15 11 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 12 N -0.89 -25.26 13.29 55.43 0.74 -24.53 15 13 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 15 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 15 17 O -0.23 -5.05 10.87 5.38 0.06 -5.00 15 18 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.07 1.87 8.14 -51.93 -0.42 1.45 15 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 245.34 15.07 3.70 3.70 Total: -1.00 -30.48 245.34 -3.47 -33.95 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -3.35 Total: -5.08 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.39 Total: -5.94 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 1.53 Total: -37.78 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.06 Total: -5.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.48 -3.47 -33.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058518033.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.616 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds