Wall clock time and date at job start Mon Mar 30 2020 02:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 N 1.30756 * 126.28781 * 89.71521 * 5 4 2 7 7 C 1.36356 * 105.51254 * 179.86602 * 6 5 4 8 8 C 1.41733 * 126.58693 * 180.12586 * 7 6 5 9 9 H 1.08001 * 120.00371 * 0.30391 * 8 7 6 10 10 C 1.39974 * 119.99867 * 180.29323 * 8 7 6 11 11 N 1.30744 * 120.00413 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00040 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47077 * 60.00626 * 12 10 8 14 14 H 1.48499 * 109.47203 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47329 * 300.00748 * 12 10 8 16 16 N 1.31868 * 106.82424 * 0.39514 * 7 6 5 17 17 O 1.21273 * 109.90018 * 359.75566 * 16 7 6 18 18 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 21 21 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 22 22 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 23 23 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 25 25 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 26 26 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 27 27 H 0.96993 * 120.00297 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 7 0.5338 -2.6915 -1.6518 7 6 0.6123 -4.0248 -1.3769 8 6 -0.3566 -5.0105 -1.6905 9 1 -1.2653 -4.7308 -2.2029 10 6 -0.1358 -6.3465 -1.3364 11 7 0.9641 -6.6852 -0.7159 12 14 -1.4131 -7.6456 -1.7491 13 1 -1.6138 -7.6928 -3.2198 14 1 -0.9441 -8.9707 -1.2704 15 1 -2.6972 -7.3059 -1.0850 16 7 1.7602 -4.2199 -0.7579 17 8 2.3533 -3.1680 -0.6467 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6055 -0.2617 -2.1370 26 1 3.1264 -0.6442 -1.2952 27 1 1.1169 -7.6110 -0.4702 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:17 Heat of formation + Delta-G solvation = 34.193035 kcal Electronic energy + Delta-G solvation = -12230.237149 eV Core-core repulsion = 9990.422948 eV Total energy + Delta-G solvation = -2239.814201 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.14411 -36.33734 -34.29260 -32.84479 -30.52639 -27.03143 -26.87104 -26.25998 -21.71859 -21.02594 -19.77485 -17.16098 -16.02829 -15.61567 -15.13445 -14.54073 -13.73798 -13.61972 -12.96182 -12.55343 -12.09267 -11.76901 -11.28142 -11.26232 -10.98435 -10.77041 -10.66729 -10.51801 -10.31795 -10.10718 -10.00049 -9.15106 -8.97104 -8.00546 -6.57723 -4.58180 2.96223 3.09763 3.13335 3.16889 4.01581 4.11547 4.40532 5.03875 5.12933 5.33148 5.40194 5.48376 5.77511 5.86583 5.95076 6.05413 6.09580 6.26026 6.32316 6.57262 6.68489 6.72742 7.09086 7.31224 7.85104 8.34985 8.59355 8.90621 10.38249 10.52789 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.077365 B = 0.008673 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.832646 B = 3227.729930 C = 3428.837670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.011 4.011 5 C 0.120 3.880 6 N -0.518 5.518 7 C 0.287 3.713 8 C -0.435 4.435 9 H 0.090 0.910 10 C 0.070 3.930 11 N -0.775 5.775 12 Si 0.923 3.077 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.265 1.265 16 N -0.426 5.426 17 O 0.012 5.988 18 H 0.066 0.934 19 H 0.047 0.953 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 9.543 0.738 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.050 4.050 5 C -0.103 4.103 6 N -0.259 5.259 7 C 0.035 3.965 8 C -0.476 4.476 9 H 0.108 0.892 10 C -0.151 4.151 11 N -0.404 5.404 12 Si 0.748 3.252 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.190 1.190 16 N -0.155 5.155 17 O -0.028 6.028 18 H 0.085 0.915 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.868 8.711 0.939 8.804 hybrid contribution -0.514 -0.625 -0.174 0.828 sum 0.355 8.086 0.765 8.130 Atomic orbital electron populations 1.21848 0.94566 1.03155 1.00855 1.21082 0.96789 0.95601 0.97717 1.21816 1.00819 0.95666 1.01754 1.19928 1.01289 0.84218 0.99544 1.28008 0.89749 0.95283 0.97230 1.72170 1.20493 1.08086 1.25159 1.22455 0.92438 0.87722 0.93878 1.18354 1.03168 0.89515 1.36560 0.89223 1.25829 0.96175 0.99460 0.93600 1.69867 1.23088 1.19245 1.28171 0.86136 0.80677 0.78733 0.79692 1.18998 1.20392 1.18999 1.75584 1.11248 0.99020 1.29633 1.85187 1.43936 1.12731 1.60969 0.91473 0.93393 0.92689 0.90889 0.92657 0.92632 0.92581 0.89114 0.89857 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.01 37.16 0.33 -1.91 15 2 C -0.09 -1.31 2.91 -90.62 -0.26 -1.57 15 3 C -0.14 -1.52 9.19 37.16 0.34 -1.17 15 4 C -0.01 -0.17 5.32 -27.89 -0.15 -0.32 15 5 C 0.12 2.74 6.94 -12.92 -0.09 2.65 15 6 N -0.52 -13.67 10.91 -10.83 -0.12 -13.79 15 7 C 0.29 8.56 7.70 -157.00 -1.21 7.35 15 8 C -0.44 -12.72 9.52 -37.60 -0.36 -13.08 15 9 H 0.09 2.49 7.85 -52.49 -0.41 2.07 15 10 C 0.07 1.93 5.50 -17.36 -0.10 1.83 15 11 N -0.77 -22.43 11.98 55.55 0.67 -21.76 15 12 Si 0.92 20.06 29.56 -169.99 -5.02 15.04 15 13 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 16 N -0.43 -12.81 10.49 30.27 0.32 -12.49 15 17 O 0.01 0.31 11.28 17.71 0.20 0.51 15 18 H 0.07 1.29 6.83 -51.93 -0.35 0.93 15 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 15 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 15 25 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 27 H 0.28 7.29 8.29 -40.82 -0.34 6.95 15 LS Contribution 239.72 15.07 3.61 3.61 Total: -1.00 -32.71 239.72 -5.12 -37.82 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -3.28 Total: -2.74 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.49 Total: -6.21 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.86 Total: -48.04 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: 0.20 Total: 0.51 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.71 -5.12 -37.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.016 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds