Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 N 1.30756 * 126.28781 * 89.71521 * 5 4 2 7 7 C 1.36356 * 105.51254 * 179.86602 * 6 5 4 8 8 C 1.41733 * 126.58693 * 180.12586 * 7 6 5 9 9 H 1.08001 * 120.00371 * 0.30391 * 8 7 6 10 10 C 1.39974 * 119.99867 * 180.29323 * 8 7 6 11 11 N 1.30744 * 120.00413 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00040 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47077 * 60.00626 * 12 10 8 14 14 H 1.48499 * 109.47203 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47329 * 300.00748 * 12 10 8 16 16 N 1.31868 * 106.82424 * 0.39514 * 7 6 5 17 17 O 1.21273 * 109.90018 * 359.75566 * 16 7 6 18 18 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 21 21 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 22 22 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 23 23 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 25 25 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 26 26 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 27 27 H 0.96993 * 120.00297 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 7 0.5338 -2.6915 -1.6518 7 6 0.6123 -4.0248 -1.3769 8 6 -0.3566 -5.0105 -1.6905 9 1 -1.2653 -4.7308 -2.2029 10 6 -0.1358 -6.3465 -1.3364 11 7 0.9641 -6.6852 -0.7159 12 14 -1.4131 -7.6456 -1.7491 13 1 -1.6138 -7.6928 -3.2198 14 1 -0.9441 -8.9707 -1.2704 15 1 -2.6972 -7.3059 -1.0850 16 7 1.7602 -4.2199 -0.7579 17 8 2.3533 -3.1680 -0.6467 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6055 -0.2617 -2.1370 26 1 3.1264 -0.6442 -1.2952 27 1 1.1169 -7.6110 -0.4702 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071495843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = 10.982813 kcal Electronic energy + Delta-G solvation = -12231.243620 eV Core-core repulsion = 9990.422948 eV Total energy + Delta-G solvation = -2240.820672 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.23760 -37.60794 -36.37795 -34.85856 -32.40981 -28.84254 -28.16452 -27.91346 -23.84061 -22.82669 -21.13301 -19.11659 -18.08952 -17.71306 -16.63222 -16.21157 -15.29219 -14.90207 -14.74528 -13.87970 -13.39173 -13.10296 -13.02821 -12.94626 -12.69001 -12.28168 -12.16743 -12.06843 -11.92375 -11.76876 -11.57654 -11.10553 -11.07317 -10.09622 -8.64346 -6.79500 1.04537 1.35952 1.37373 1.52026 2.06485 2.19183 2.73594 3.22180 3.57991 3.95908 4.07964 4.24098 4.56971 4.63806 4.78587 4.80782 4.89730 5.04274 5.10941 5.18391 5.24875 5.33310 5.48429 5.53733 5.80461 6.16392 6.47616 6.75595 8.34333 8.47187 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.077365 B = 0.008673 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.832646 B = 3227.729930 C = 3428.837670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.134 4.134 4 C -0.011 4.011 5 C 0.142 3.858 6 N -0.542 5.542 7 C 0.256 3.744 8 C -0.472 4.472 9 H 0.092 0.908 10 C 0.022 3.978 11 N -0.815 5.815 12 Si 1.010 2.990 13 H -0.255 1.255 14 H -0.265 1.265 15 H -0.256 1.256 16 N -0.466 5.466 17 O 0.001 5.999 18 H 0.019 0.981 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 10.586 0.449 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.191 4.191 4 C -0.050 4.050 5 C -0.080 4.080 6 N -0.282 5.282 7 C 0.004 3.996 8 C -0.512 4.512 9 H 0.110 0.890 10 C -0.195 4.195 11 N -0.444 5.444 12 Si 0.828 3.172 13 H -0.179 1.179 14 H -0.189 1.189 15 H -0.180 1.180 16 N -0.197 5.197 17 O -0.038 6.038 18 H 0.038 0.962 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.632 9.797 0.649 9.839 hybrid contribution -0.384 -0.807 -0.064 0.896 sum 0.248 8.990 0.586 9.013 Atomic orbital electron populations 1.21838 0.95619 1.00422 1.02423 1.21089 0.95838 0.97908 0.95971 1.21748 1.01792 0.92495 1.03052 1.20424 1.03570 0.79619 1.01403 1.29313 0.87963 0.97118 0.93582 1.72156 1.22217 1.06970 1.26838 1.22973 0.92943 0.89264 0.94392 1.18816 1.03604 0.90945 1.37880 0.88957 1.27005 0.98587 1.01402 0.92491 1.69976 1.25287 1.20374 1.28723 0.84863 0.77248 0.75201 0.79885 1.17890 1.18946 1.17963 1.75549 1.11972 1.00951 1.31270 1.85087 1.44001 1.12911 1.61757 0.96204 0.91434 0.91618 0.92190 0.91441 0.91056 0.91265 0.87275 0.86654 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.01 71.98 0.65 -3.63 15 2 C -0.09 -2.31 2.91 -10.79 -0.03 -2.34 15 3 C -0.13 -2.29 9.19 71.98 0.66 -1.63 15 4 C -0.01 -0.34 5.32 29.84 0.16 -0.18 15 5 C 0.14 6.55 6.94 88.33 0.61 7.17 15 6 N -0.54 -29.31 10.91 -304.63 -3.32 -32.64 15 7 C 0.26 15.84 7.70 134.75 1.04 16.88 15 8 C -0.47 -28.41 9.52 23.55 0.22 -28.19 15 9 H 0.09 5.27 7.85 -2.91 -0.02 5.25 15 10 C 0.02 1.23 5.50 85.28 0.47 1.70 15 11 N -0.81 -48.13 11.98 21.83 0.26 -47.87 15 12 Si 1.01 41.09 29.56 68.60 2.03 43.12 15 13 H -0.25 -9.88 7.11 99.48 0.71 -9.17 15 14 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 16 N -0.47 -29.00 10.49 -60.21 -0.63 -29.63 15 17 O 0.00 0.06 11.28 73.44 0.83 0.89 15 18 H 0.02 0.74 6.83 -2.39 -0.02 0.73 15 19 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 15 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.11 2.93 8.14 -2.38 -0.02 2.91 15 26 H 0.12 2.76 8.14 -2.39 -0.02 2.74 15 27 H 0.29 15.20 8.29 -92.71 -0.77 14.43 15 Total: -1.00 -74.04 239.72 4.10 -69.94 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.16 Total: 6.42 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 3.78 Total: -10.22 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -3.69 Total: -110.14 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: 0.83 Total: 0.89 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -74.04 4.10 -69.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.918 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds