Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46954 * 2 1 4 4 H 1.08996 * 109.47227 * 305.00416 * 3 2 1 5 5 C 1.52998 * 109.46727 * 65.00256 * 3 2 1 6 6 C 1.50694 * 109.47011 * 185.00189 * 3 2 1 7 7 N 1.30747 * 126.28891 * 120.00059 * 6 3 2 8 8 C 1.36356 * 105.51513 * 180.02562 * 7 6 3 9 9 C 1.41741 * 126.58754 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99685 * 354.28422 * 9 8 7 11 11 C 1.39973 * 119.99837 * 174.56186 * 9 8 7 12 12 N 1.30739 * 120.00312 * 5.66956 * 11 9 8 13 13 Si 1.86798 * 119.99882 * 185.67365 * 11 9 8 14 14 H 1.48504 * 109.47174 * 94.97850 * 13 11 9 15 15 H 1.48496 * 109.47381 * 214.97847 * 13 11 9 16 16 H 1.48500 * 109.47300 * 334.97859 * 13 11 9 17 17 N 1.31862 * 106.82607 * 0.26493 * 8 7 6 18 18 O 1.21278 * 109.89606 * 359.54254 * 17 8 7 19 19 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47362 * 299.99244 * 1 2 3 21 21 H 1.08994 * 109.47289 * 59.99741 * 1 2 3 22 22 H 1.09000 * 109.46732 * 240.00412 * 2 1 3 23 23 H 1.08995 * 109.47288 * 120.00816 * 2 1 3 24 24 H 1.08994 * 109.47669 * 299.99965 * 5 3 2 25 25 H 1.09006 * 109.47240 * 59.99976 * 5 3 2 26 26 H 1.09001 * 109.47109 * 179.97438 * 5 3 2 27 27 H 0.96996 * 120.00605 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4444 -0.1239 7 7 4.2386 1.9985 -1.0814 8 6 5.5434 1.7457 -0.7763 9 6 6.6789 2.1487 -1.5227 10 1 6.5520 2.6343 -2.4789 11 6 7.9648 1.9120 -1.0230 12 7 8.1223 1.2222 0.0764 13 14 9.4560 2.5819 -1.9269 14 1 9.8497 3.8855 -1.3344 15 1 10.5822 1.6219 -1.8036 16 1 9.1216 2.7709 -3.3614 17 7 5.5455 1.0498 0.3437 18 8 4.4071 0.8786 0.7255 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 0.5490 2.1251 1.3971 25 1 2.0699 1.5874 2.1492 26 1 1.9989 3.1540 1.3077 27 1 9.0134 1.0585 0.4229 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641530.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = 10.643818 kcal Electronic energy + Delta-G solvation = -12223.895237 eV Core-core repulsion = 9983.059865 eV Total energy + Delta-G solvation = -2240.835372 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.27702 -37.59791 -36.42996 -34.88633 -32.18330 -30.14259 -28.61538 -26.05680 -23.90441 -23.25206 -21.38074 -18.95886 -18.10966 -17.73356 -16.70303 -16.14401 -15.81866 -14.92032 -14.58970 -13.70043 -13.30349 -13.23919 -13.07053 -12.93522 -12.63469 -12.35677 -12.26866 -12.14015 -11.92443 -11.77989 -11.55691 -11.16022 -11.10702 -10.13456 -8.66547 -6.81507 1.01090 1.34317 1.35797 1.54242 2.03582 2.18754 2.66375 3.18305 3.44922 3.99178 4.04195 4.30346 4.54349 4.58509 4.61251 4.74613 4.93736 5.10640 5.12445 5.16306 5.18999 5.28888 5.42178 5.54044 5.76545 6.14991 6.44111 6.73642 8.32208 8.44086 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.090056 B = 0.008277 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.841779 B = 3382.110510 C = 3452.599327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.012 3.988 4 H 0.110 0.890 5 C -0.141 4.141 6 C 0.146 3.854 7 N -0.555 5.555 8 C 0.256 3.744 9 C -0.472 4.472 10 H 0.093 0.907 11 C 0.022 3.978 12 N -0.813 5.813 13 Si 1.011 2.989 14 H -0.260 1.260 15 H -0.263 1.263 16 H -0.252 1.252 17 N -0.465 5.465 18 O 0.008 5.992 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 -0.065 0.703 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.008 4.008 4 H 0.128 0.872 5 C -0.198 4.198 6 C -0.077 4.077 7 N -0.294 5.294 8 C 0.004 3.996 9 C -0.513 4.513 10 H 0.111 0.889 11 C -0.195 4.195 12 N -0.442 5.442 13 Si 0.830 3.170 14 H -0.184 1.184 15 H -0.188 1.188 16 H -0.176 1.176 17 N -0.196 5.196 18 O -0.031 6.031 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.749 -0.259 0.940 9.797 hybrid contribution 0.865 0.146 -0.269 0.918 sum -8.883 -0.113 0.671 8.909 Atomic orbital electron populations 1.21769 0.91863 1.02999 1.03246 1.21572 0.98644 0.93106 1.02098 1.19958 0.78643 0.99971 1.02244 0.87165 1.21884 1.03919 0.99623 0.94413 1.29358 0.98821 0.92806 0.86666 1.72157 1.03053 1.26915 1.27323 1.22988 0.91279 0.94057 0.91281 1.18859 0.88188 1.38458 1.05763 0.88926 1.27025 1.03555 0.93270 0.95626 1.69982 1.25927 1.28963 1.19368 0.84775 0.74657 0.78585 0.79021 1.18414 1.18758 1.17555 1.75544 0.95503 1.29216 1.19353 1.85069 1.12056 1.60216 1.45726 0.91375 0.90498 0.91796 0.93357 0.91524 0.87187 0.92371 0.93402 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.67 71.98 0.70 -1.76 15 2 C -0.12 -3.05 5.38 30.60 0.16 -2.89 15 3 C 0.01 0.38 2.86 -11.54 -0.03 0.35 15 4 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 5 C -0.14 -3.56 8.93 71.98 0.64 -2.92 15 6 C 0.15 6.88 6.98 88.33 0.62 7.49 15 7 N -0.55 -30.93 11.62 -304.65 -3.54 -34.47 15 8 C 0.26 16.01 7.70 134.76 1.04 17.05 15 9 C -0.47 -28.64 9.51 23.56 0.22 -28.41 15 10 H 0.09 5.34 7.85 -2.91 -0.02 5.32 15 11 C 0.02 1.25 5.49 85.28 0.47 1.71 15 12 N -0.81 -48.07 12.01 21.82 0.26 -47.81 15 13 Si 1.01 41.13 29.56 68.60 2.03 43.15 15 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 15 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 16 H -0.25 -9.78 7.11 99.48 0.71 -9.07 15 17 N -0.47 -29.13 10.51 -60.22 -0.63 -29.77 15 18 O 0.01 0.44 11.28 73.42 0.83 1.27 15 19 H 0.07 1.04 8.14 -2.38 -0.02 1.02 15 20 H 0.08 1.07 6.57 -2.39 -0.02 1.06 15 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.11 1.85 6.56 -2.39 -0.02 1.84 15 25 H 0.06 1.54 8.14 -2.38 -0.02 1.52 15 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 27 H 0.29 15.15 8.29 -92.71 -0.77 14.38 15 Total: -1.00 -74.83 239.08 3.92 -70.90 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.16 Total: 6.08 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.82 Total: -9.37 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -3.91 Total: -112.05 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: 0.83 Total: 1.27 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -74.83 3.92 -70.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641530.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.548 kcal (2) G-P(sol) polarization free energy of solvation -74.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds