Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.50706 * 109.46888 * 240.00092 * 2 1 3 5 5 N 1.32802 * 126.17746 * 60.02549 * 4 2 1 6 6 C 1.32937 * 108.88215 * 180.02562 * 5 4 2 7 7 C 1.39420 * 125.56174 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99997 * 354.20180 * 7 6 5 9 9 C 1.40167 * 120.00051 * 174.20190 * 7 6 5 10 10 N 1.30769 * 120.00153 * 6.06505 * 9 7 6 11 11 Si 1.86802 * 119.99885 * 186.06432 * 9 7 6 12 12 H 1.48503 * 109.46958 * 94.98333 * 11 9 7 13 13 H 1.48500 * 109.46936 * 214.98181 * 11 9 7 14 14 H 1.48497 * 109.47299 * 334.98308 * 11 9 7 15 15 O 1.35102 * 108.87311 * 359.97438 * 6 5 4 16 16 C 1.34826 * 107.65399 * 359.73436 * 15 6 5 17 17 N 1.37632 * 126.53008 * 180.26217 * 16 15 6 18 18 H 1.08992 * 109.47754 * 59.99753 * 1 2 3 19 19 H 1.09000 * 109.46877 * 299.99857 * 1 2 3 20 20 H 1.09007 * 109.47162 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47479 * 119.99764 * 2 1 3 22 22 H 1.08997 * 109.47337 * 59.99820 * 3 2 1 23 23 H 1.09003 * 109.47185 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47162 * 299.99961 * 3 2 1 25 25 H 0.97001 * 120.00518 * 180.02562 * 10 9 7 26 26 H 0.96993 * 119.99939 * 180.18745 * 17 16 15 27 27 H 0.97004 * 119.99660 * 0.18573 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 1.7885 -0.3650 -2.4895 6 6 2.3973 -1.2273 -3.2977 7 6 2.3706 -1.1901 -4.6911 8 1 1.7466 -0.4706 -5.2003 9 6 3.1537 -2.0866 -5.4313 10 7 3.8169 -3.0338 -4.8206 11 14 3.2499 -1.9282 -7.2901 12 1 4.4474 -1.1304 -7.6575 13 1 3.3500 -3.2796 -7.8975 14 1 2.0291 -1.2486 -7.7929 15 8 3.0460 -2.1454 -2.5484 16 6 2.8364 -1.8376 -1.2526 17 7 3.3251 -2.5168 -0.1598 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9564 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 4.3591 -3.6540 -5.3327 26 1 3.1116 -2.2120 0.7359 27 1 3.8831 -3.3002 -0.2855 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074339286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = -4.990059 kcal Electronic energy + Delta-G solvation = -12384.822640 eV Core-core repulsion = 10143.309332 eV Total energy + Delta-G solvation = -2241.513308 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.83814 -35.27243 -33.80817 -33.03065 -31.62876 -28.05562 -26.49045 -24.58824 -21.71547 -20.43427 -18.91583 -17.23921 -15.95660 -15.65600 -14.85805 -14.60324 -14.01315 -13.70370 -13.05428 -12.48539 -12.07436 -11.55601 -11.34120 -11.29884 -10.78018 -10.60190 -10.39920 -10.24922 -10.10572 -10.06118 -9.27919 -9.01976 -8.41063 -6.77122 -6.47967 -4.24854 2.97271 3.10052 3.16143 3.54971 3.94464 4.11930 4.25813 5.38563 5.50869 5.57204 5.81141 5.93414 6.15473 6.17726 6.37331 6.51985 6.52302 6.80342 6.92079 7.08148 7.16723 7.51197 7.74469 8.23881 8.47256 8.72214 8.74962 8.92672 10.04368 10.27655 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.053422 B = 0.010589 C = 0.009394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.007481 B = 2643.607515 C = 2979.768258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 C -0.134 4.134 4 C -0.064 4.064 5 N -0.582 5.582 6 C 0.335 3.665 7 C -0.433 4.433 8 H 0.109 0.891 9 C 0.069 3.931 10 N -0.792 5.792 11 Si 0.928 3.072 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.259 1.259 15 O -0.193 6.193 16 C 0.109 3.891 17 N -0.847 5.847 18 H 0.061 0.939 19 H 0.041 0.959 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.281 0.719 26 H 0.404 0.596 27 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 1.151 5.306 5.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.192 4.192 5 N -0.315 5.315 6 C 0.145 3.855 7 C -0.470 4.470 8 H 0.126 0.874 9 C -0.151 4.151 10 N -0.421 5.421 11 Si 0.752 3.248 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.183 1.183 15 O -0.083 6.083 16 C -0.045 4.045 17 N -0.400 5.400 18 H 0.080 0.920 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.234 0.766 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.928 1.545 4.936 5.255 hybrid contribution 0.835 -1.004 -0.202 1.321 sum -0.093 0.541 4.734 4.766 Atomic orbital electron populations 1.21717 0.95507 1.01045 1.00844 1.19031 0.94805 0.94620 0.92581 1.21721 1.00415 0.96148 1.00846 1.20705 1.06764 0.97748 0.93951 1.70517 1.31744 1.30078 0.99140 1.21616 0.88904 0.82373 0.92606 1.18166 1.25419 1.17819 0.85575 0.87352 1.26008 0.93588 0.93451 1.02021 1.69772 1.21983 1.12028 1.38366 0.85970 0.79802 0.78352 0.80684 1.19411 1.20235 1.18269 1.84781 1.62195 1.48469 1.12878 1.19587 1.05557 0.98196 0.81196 1.40241 1.61876 1.34715 1.03199 0.91999 0.93964 0.93508 0.92649 0.93961 0.93515 0.91996 0.90832 0.76552 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.17 37.15 0.34 -2.02 15 2 C 0.01 0.17 3.34 -91.77 -0.31 -0.14 15 3 C -0.13 -2.37 9.18 37.16 0.34 -2.03 15 4 C -0.06 -1.58 5.70 -82.08 -0.47 -2.05 15 5 N -0.58 -16.25 11.32 -9.14 -0.10 -16.35 15 6 C 0.33 9.87 7.62 -16.63 -0.13 9.74 15 7 C -0.43 -12.22 9.42 -38.42 -0.36 -12.58 15 8 H 0.11 2.92 7.86 -52.49 -0.41 2.51 15 9 C 0.07 1.81 5.49 -17.28 -0.09 1.72 15 10 N -0.79 -21.59 11.98 55.56 0.67 -20.92 15 11 Si 0.93 19.17 29.57 -169.99 -5.03 14.15 15 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 14 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 15 O -0.19 -5.59 9.06 2.01 0.02 -5.57 15 16 C 0.11 2.72 8.59 -14.86 -0.13 2.59 15 17 N -0.85 -16.09 9.03 31.16 0.28 -15.81 15 18 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.05 0.83 8.14 -51.92 -0.42 0.41 15 21 H 0.06 0.93 7.03 -51.93 -0.37 0.57 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 26 H 0.40 6.28 7.84 -40.82 -0.32 5.96 15 27 H 0.39 6.78 8.95 -40.82 -0.37 6.42 15 LS Contribution 239.61 15.07 3.61 3.61 Total: -1.00 -31.47 239.61 -4.49 -35.96 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.13 Total: 9.71 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.80 Total: -4.77 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.84 Total: -53.09 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.02 Total: -5.57 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.47 -4.49 -35.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074339286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.968 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds