Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.81843 * 2 1 4 4 C 1.50697 * 109.46995 * 59.12470 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72153 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.51298 * 109.89786 * 120.92247 * 2 1 3 13 13 O 1.20763 * 126.99456 * 281.30749 * 12 2 1 14 14 C 1.51721 * 106.00747 * 101.33591 * 12 2 1 15 15 C 1.54072 * 104.62125 * 28.90702 * 14 12 2 16 16 C 1.51196 * 109.82602 * 239.12093 * 2 1 3 17 17 O 1.20757 * 126.35298 * 60.39880 * 16 2 1 18 18 H 1.09000 * 109.47534 * 59.99849 * 1 2 3 19 19 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47281 * 300.00242 * 1 2 3 21 21 H 1.08998 * 109.47065 * 299.11896 * 3 2 1 22 22 H 1.09001 * 109.46892 * 179.12160 * 3 2 1 23 23 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.41402 * 270.12141 * 14 12 2 25 25 H 1.09000 * 110.40633 * 147.69191 * 14 12 2 26 26 H 1.08996 * 110.22795 * 212.13312 * 15 14 12 27 27 H 1.09003 * 110.22690 * 90.18143 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 1.5331 2.1591 1.2195 5 1 0.8952 1.6431 1.9216 6 6 1.8715 3.4782 1.4359 7 7 2.6488 4.1064 0.5811 8 14 1.2261 4.3726 2.9435 9 1 1.6927 3.6766 4.1696 10 1 1.7307 5.7693 2.9441 11 1 -0.2586 4.3833 2.9149 12 6 2.0449 -0.7311 1.2204 13 8 2.1144 -0.3039 2.3479 14 6 2.4569 -2.1098 0.7394 15 6 2.8664 -1.9023 -0.7313 16 6 2.0428 -0.7300 -1.2207 17 8 1.8336 -0.4334 -2.3725 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.7015 1.9507 -0.8978 22 1 3.1386 1.4328 0.0158 23 1 2.8871 5.0342 0.7336 24 1 1.6177 -2.8022 0.8061 25 1 3.3019 -2.4784 1.3209 26 1 2.6379 -2.7936 -1.3155 27 1 3.9294 -1.6698 -0.7973 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546671.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -85.856311 kcal Electronic energy + Delta-G solvation = -12607.379252 eV Core-core repulsion = 10330.066569 eV Total energy + Delta-G solvation = -2277.312683 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18116 -37.97858 -34.79647 -33.35743 -31.51916 -27.14649 -25.52322 -24.69101 -22.08317 -19.93499 -17.93100 -16.51455 -15.66693 -15.47660 -14.77623 -14.34543 -13.94139 -13.57207 -13.46038 -12.78176 -12.42168 -12.09346 -11.76029 -11.67461 -11.19749 -11.11458 -10.87395 -10.70005 -10.40655 -9.86903 -9.43096 -8.88403 -8.44302 -8.25706 -5.97358 -3.97719 2.28805 2.57309 3.38501 3.41753 3.46500 4.37635 4.47173 4.56024 4.93231 5.03810 5.17318 5.39214 5.63249 5.74354 5.83945 5.86669 5.94944 6.01701 6.42766 6.65340 6.78862 7.46281 7.54312 7.84340 7.99525 8.14433 8.34747 9.05577 9.65071 11.14260 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.045873 B = 0.012467 C = 0.011162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.237679 B = 2245.313415 C = 2507.896215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.177 4.177 3 C 0.048 3.952 4 C -0.506 4.506 5 H 0.067 0.933 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.386 3.614 13 O -0.403 6.403 14 C -0.180 4.180 15 C -0.177 4.177 16 C 0.385 3.615 17 O -0.440 6.440 18 H 0.066 0.934 19 H 0.040 0.960 20 H 0.080 0.920 21 H 0.033 0.967 22 H 0.018 0.982 23 H 0.261 0.739 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -11.677 -0.751 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.179 4.179 3 C 0.011 3.989 4 C -0.544 4.544 5 H 0.085 0.915 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.256 3.744 13 O -0.271 6.271 14 C -0.217 4.217 15 C -0.215 4.215 16 C 0.259 3.741 17 O -0.311 6.311 18 H 0.085 0.915 19 H 0.059 0.941 20 H 0.099 0.901 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.154 -11.106 -0.778 11.193 hybrid contribution -0.125 0.498 0.744 0.904 sum -1.279 -10.607 -0.034 10.684 Atomic orbital electron populations 1.21498 0.90665 1.00208 1.04556 1.22269 0.99364 1.02147 0.94110 1.19047 0.96261 0.84516 0.99073 1.21115 1.30526 0.95874 1.06902 0.91488 1.24983 0.95293 0.97634 0.96563 1.69962 1.36364 1.11369 1.36160 0.86607 0.79156 0.78433 0.83551 1.20116 1.21449 1.20270 1.24063 0.73554 0.87893 0.88848 1.90422 1.42224 1.72255 1.22184 1.22750 1.03642 0.99105 0.96250 1.22605 1.02511 0.99912 0.96430 1.24405 0.76581 0.83753 0.89332 1.90363 1.52114 1.66984 1.21686 0.91467 0.94107 0.90115 0.94911 0.96321 0.92967 0.87901 0.88739 0.88452 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 8.25 37.16 0.31 -1.74 15 2 C -0.18 -3.53 0.65 -156.28 -0.10 -3.63 15 3 C 0.05 1.24 4.06 -27.88 -0.11 1.12 15 4 C -0.51 -14.16 7.21 -34.44 -0.25 -14.41 15 5 H 0.07 1.85 5.66 -52.49 -0.30 1.55 15 6 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 7 N -0.90 -27.27 13.29 55.43 0.74 -26.54 15 8 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 15 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 C 0.39 7.19 6.48 -28.24 -0.18 7.01 15 13 O -0.40 -9.03 15.88 6.00 0.10 -8.93 15 14 C -0.18 -2.27 6.77 -26.82 -0.18 -2.46 15 15 C -0.18 -2.25 6.73 -26.98 -0.18 -2.43 15 16 C 0.38 6.82 6.48 -28.45 -0.18 6.64 15 17 O -0.44 -8.94 17.99 6.00 0.11 -8.84 15 18 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.08 1.58 6.59 -51.93 -0.34 1.24 15 21 H 0.03 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.26 7.51 8.31 -40.82 -0.34 7.18 15 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.11 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 235.79 15.07 3.55 3.55 Total: -1.00 -32.52 235.79 -4.67 -37.19 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -3.16 Total: -5.31 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.98 Total: -8.37 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.20 Total: -17.77 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.52 -4.67 -37.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546671.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.670 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds