Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.81843 * 2 1 4 4 C 1.50697 * 109.46995 * 59.12470 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72153 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.51298 * 109.89786 * 120.92247 * 2 1 3 13 13 O 1.20763 * 126.99456 * 281.30749 * 12 2 1 14 14 C 1.51721 * 106.00747 * 101.33591 * 12 2 1 15 15 C 1.54072 * 104.62125 * 28.90702 * 14 12 2 16 16 C 1.51196 * 109.82602 * 239.12093 * 2 1 3 17 17 O 1.20757 * 126.35298 * 60.39880 * 16 2 1 18 18 H 1.09000 * 109.47534 * 59.99849 * 1 2 3 19 19 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47281 * 300.00242 * 1 2 3 21 21 H 1.08998 * 109.47065 * 299.11896 * 3 2 1 22 22 H 1.09001 * 109.46892 * 179.12160 * 3 2 1 23 23 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.41402 * 270.12141 * 14 12 2 25 25 H 1.09000 * 110.40633 * 147.69191 * 14 12 2 26 26 H 1.08996 * 110.22795 * 212.13312 * 15 14 12 27 27 H 1.09003 * 110.22690 * 90.18143 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 1.5331 2.1591 1.2195 5 1 0.8952 1.6431 1.9216 6 6 1.8715 3.4782 1.4359 7 7 2.6488 4.1064 0.5811 8 14 1.2261 4.3726 2.9435 9 1 1.6927 3.6766 4.1696 10 1 1.7307 5.7693 2.9441 11 1 -0.2586 4.3833 2.9149 12 6 2.0449 -0.7311 1.2204 13 8 2.1144 -0.3039 2.3479 14 6 2.4569 -2.1098 0.7394 15 6 2.8664 -1.9023 -0.7313 16 6 2.0428 -0.7300 -1.2207 17 8 1.8336 -0.4334 -2.3725 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.7015 1.9507 -0.8978 22 1 3.1386 1.4328 0.0158 23 1 2.8871 5.0342 0.7336 24 1 1.6177 -2.8022 0.8061 25 1 3.3019 -2.4784 1.3209 26 1 2.6379 -2.7936 -1.3155 27 1 3.9294 -1.6698 -0.7973 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546671.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -108.157554 kcal Electronic energy + Delta-G solvation = -12608.346306 eV Core-core repulsion = 10330.066569 eV Total energy + Delta-G solvation = -2278.279737 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.64412 -39.49821 -36.41111 -35.13745 -33.25409 -29.08748 -26.79798 -26.35248 -23.96002 -21.29397 -19.45863 -18.51505 -17.16540 -16.90255 -16.49035 -16.13136 -15.47871 -15.08859 -14.90406 -14.31092 -14.02630 -13.72473 -13.51053 -13.24237 -12.87249 -12.82806 -12.54746 -12.31513 -12.05681 -11.69663 -11.49324 -10.65940 -10.40259 -9.91070 -8.20847 -6.27787 0.87658 1.14078 1.36415 1.40271 1.47951 2.40090 3.06847 3.12047 3.25076 3.54529 3.96374 4.17409 4.29637 4.35970 4.43964 4.80989 4.87232 4.95723 5.02289 5.13951 5.24110 5.29924 5.38832 5.77279 6.13739 6.47679 6.69415 6.84746 7.38954 8.91344 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.045873 B = 0.012467 C = 0.011162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.237679 B = 2245.313415 C = 2507.896215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.195 4.195 3 C 0.054 3.946 4 C -0.510 4.510 5 H 0.068 0.932 6 C -0.005 4.005 7 N -0.938 5.938 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.382 3.618 13 O -0.451 6.451 14 C -0.157 4.157 15 C -0.161 4.161 16 C 0.385 3.615 17 O -0.473 6.473 18 H 0.052 0.948 19 H 0.086 0.914 20 H 0.059 0.941 21 H -0.005 1.005 22 H -0.011 1.011 23 H 0.262 0.738 24 H 0.144 0.856 25 H 0.122 0.878 26 H 0.142 0.858 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -14.266 -0.086 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.197 4.197 3 C 0.017 3.983 4 C -0.548 4.548 5 H 0.086 0.914 6 C -0.202 4.202 7 N -0.579 5.579 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.256 3.744 13 O -0.323 6.323 14 C -0.194 4.194 15 C -0.198 4.198 16 C 0.262 3.738 17 O -0.347 6.347 18 H 0.071 0.929 19 H 0.105 0.895 20 H 0.078 0.922 21 H 0.013 0.987 22 H 0.008 0.992 23 H 0.071 0.929 24 H 0.161 0.839 25 H 0.140 0.860 26 H 0.160 0.840 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.352 -13.717 -0.119 13.784 hybrid contribution -0.083 1.319 0.486 1.408 sum -1.435 -12.398 0.367 12.486 Atomic orbital electron populations 1.21455 0.89763 1.02653 1.02802 1.22431 1.00573 0.99198 0.97488 1.18766 0.94321 0.88638 0.96589 1.21447 1.29889 0.96164 1.07332 0.91397 1.25922 0.95721 0.98814 0.99708 1.70098 1.37932 1.11715 1.38182 0.85566 0.79105 0.77214 0.79599 1.19812 1.20808 1.18954 1.24645 0.72081 0.90450 0.87253 1.90399 1.44172 1.73989 1.23692 1.22748 1.06058 0.94971 0.95669 1.22635 1.01929 0.98647 0.96550 1.24739 0.76378 0.84927 0.87762 1.90355 1.53397 1.68320 1.22653 0.92869 0.89521 0.92190 0.98703 0.99241 0.92933 0.83876 0.85953 0.84042 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 8.25 71.98 0.59 -3.36 15 2 C -0.19 -7.72 0.65 -53.33 -0.03 -7.75 15 3 C 0.05 2.91 4.06 29.85 0.12 3.03 15 4 C -0.51 -29.51 7.21 25.60 0.18 -29.33 15 5 H 0.07 3.85 5.66 -2.92 -0.02 3.83 15 6 C 0.00 -0.29 5.46 84.66 0.46 0.17 15 7 N -0.94 -59.00 13.29 21.45 0.28 -58.72 15 8 Si 0.96 46.55 29.54 68.60 2.03 48.57 15 9 H -0.27 -13.02 7.11 99.48 0.71 -12.31 15 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 11 H -0.26 -12.20 7.11 99.48 0.71 -11.49 15 12 C 0.38 13.55 6.48 29.62 0.19 13.75 15 13 O -0.45 -20.00 15.88 -1.46 -0.02 -20.02 15 14 C -0.16 -3.16 6.77 30.54 0.21 -2.95 15 15 C -0.16 -3.30 6.73 30.43 0.20 -3.10 15 16 C 0.39 13.01 6.48 29.48 0.19 13.20 15 17 O -0.47 -19.02 17.99 -1.44 -0.03 -19.05 15 18 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 19 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 20 H 0.06 2.37 6.59 -2.38 -0.02 2.36 15 21 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 23 H 0.26 15.56 8.31 -92.71 -0.77 14.79 15 24 H 0.14 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.12 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.14 1.85 8.14 -2.39 -0.02 1.83 15 27 H 0.12 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -75.38 235.79 5.55 -69.83 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: 1.16 Total: -4.27 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 2.12 Total: -16.34 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.28 Total: -58.72 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.05 Total: -39.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.38 5.55 -69.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546671.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.327 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds