Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.29062 * 2 1 4 4 C 1.54302 * 110.32622 * 237.87043 * 2 1 3 5 5 H 1.08998 * 110.44811 * 358.94874 * 4 2 1 6 6 C 1.47203 * 110.44691 * 121.48454 * 4 2 1 7 7 N 3.46324 * 126.27596 * 286.15216 * 2 1 3 8 8 C 1.54507 * 104.41564 * 240.21539 * 4 2 1 9 9 O 1.44620 * 103.95188 * 336.62963 * 8 4 2 10 10 N 1.47741 * 104.63307 * 39.02765 * 9 8 4 11 11 C 1.46904 * 110.99919 * 199.32387 * 10 9 8 12 12 C 1.50704 * 109.46760 * 306.85235 * 11 10 9 13 13 H 1.07994 * 120.00360 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99406 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00573 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99862 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47059 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46911 * 120.00198 * 16 14 12 19 19 H 1.48495 * 109.47216 * 239.99889 * 16 14 12 20 20 H 1.09004 * 109.46922 * 182.12544 * 1 2 3 21 21 H 1.08997 * 109.47582 * 302.12919 * 1 2 3 22 22 H 1.09005 * 109.47189 * 62.13001 * 1 2 3 23 23 H 1.09003 * 110.53150 * 95.24611 * 8 4 2 24 24 H 1.09003 * 110.53308 * 218.01659 * 8 4 2 25 25 H 1.08997 * 109.46988 * 66.84924 * 11 10 9 26 26 H 1.08993 * 109.46830 * 186.85452 * 11 10 9 27 27 H 0.97000 * 120.00478 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0659 -0.7695 -1.2253 5 1 1.2407 -1.1640 -1.8181 6 6 2.9201 0.1032 -2.0474 7 7 3.5791 0.7767 -2.6818 8 6 2.8966 -1.9239 -0.6214 9 8 3.2531 -1.4449 0.6958 10 7 2.0468 -0.7398 1.1757 11 6 2.3760 0.1795 2.2732 12 6 3.1206 -0.5687 3.3488 13 1 3.3288 -1.6215 3.2290 14 6 3.5369 0.0915 4.4855 15 7 3.2847 1.3740 4.6308 16 14 4.4593 -0.8360 5.8192 17 1 4.6151 -2.2569 5.4167 18 1 5.7997 -0.2260 6.0096 19 1 3.6967 -0.7621 7.0913 20 1 -0.3633 -1.0270 0.0381 21 1 -0.3634 0.5465 0.8702 22 1 -0.3634 0.4804 -0.9085 23 1 2.2954 -2.8302 -0.5489 24 1 3.7911 -2.1039 -1.2177 25 1 3.0007 0.9885 1.8944 26 1 1.4572 0.5936 2.6882 27 1 3.5773 1.8383 5.4306 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = 8.275440 kcal Electronic energy + Delta-G solvation = -12270.357049 eV Core-core repulsion = 10029.418976 eV Total energy + Delta-G solvation = -2240.938073 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29948 -37.44562 -35.42148 -34.44713 -32.97295 -29.74905 -27.81027 -25.04144 -23.92655 -21.82482 -19.32814 -18.22801 -17.08970 -16.67092 -16.38966 -15.93788 -15.17097 -14.70567 -14.40262 -14.29161 -14.04009 -13.63585 -13.48978 -13.14998 -12.93319 -12.67553 -12.41528 -12.11076 -12.02402 -11.87913 -11.34808 -11.26044 -10.64569 -9.52936 -8.23967 -6.31891 1.41797 1.42378 1.50784 1.57152 1.61128 2.15849 2.41743 2.78379 3.11621 3.45686 3.56659 3.96756 4.18330 4.36314 4.59283 4.71679 4.81612 4.84021 4.99475 5.10320 5.19298 5.39041 5.60814 5.78429 5.87967 6.30455 6.40068 6.82007 7.36375 8.88568 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047853 B = 0.009542 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.984579 B = 2933.648578 C = 3039.998407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.022 3.978 3 H 0.038 0.962 4 C -0.012 4.012 5 H 0.190 0.810 6 C 0.235 3.765 7 N -0.481 5.481 8 C 0.046 3.954 9 O -0.276 6.276 10 N -0.313 5.313 11 C 0.180 3.820 12 C -0.518 4.518 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.273 1.273 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.104 0.896 25 H -0.033 1.033 26 H 0.044 0.956 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -6.837 -9.918 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.089 4.089 3 H 0.056 0.944 4 C -0.034 4.034 5 H 0.207 0.793 6 C -0.082 4.082 7 N -0.158 5.158 8 C -0.033 4.033 9 O -0.280 6.280 10 N -0.081 5.081 11 C 0.053 3.947 12 C -0.557 4.557 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.198 1.198 20 H 0.109 0.891 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.134 0.866 24 H 0.122 0.878 25 H -0.015 1.015 26 H 0.062 0.938 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.722 -6.089 -10.441 13.373 hybrid contribution 1.006 0.736 0.734 1.447 sum -4.716 -5.353 -9.706 12.046 Atomic orbital electron populations 1.21706 0.88581 1.04613 1.03145 1.23428 0.99936 0.95973 0.89542 0.94419 1.20766 0.96995 0.91965 0.93658 0.79330 1.29410 0.93086 0.93247 0.92438 1.81201 1.11108 1.10764 1.12690 1.23747 1.00338 0.95802 0.83436 1.92066 1.31641 1.71722 1.32587 1.71255 1.07238 1.25869 1.03763 1.19934 0.95890 0.89867 0.88980 1.21364 1.35275 0.96649 1.02378 0.91733 1.25913 0.97104 0.95794 1.00959 1.70070 1.48352 1.10159 1.29170 0.85285 0.77837 0.78888 0.78332 1.18757 1.20826 1.19793 0.89121 0.93218 0.88561 0.86589 0.87822 1.01525 0.93807 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.39 71.98 0.68 -2.03 15 2 C 0.02 0.68 2.95 45.10 0.13 0.81 15 3 H 0.04 1.37 7.15 -2.39 -0.02 1.35 15 4 C -0.01 -0.27 3.18 -11.64 -0.04 -0.31 15 5 H 0.19 2.10 7.72 -2.39 -0.02 2.08 15 6 C 0.24 6.74 14.36 89.44 1.28 8.03 15 7 N -0.48 -16.51 18.54 20.01 0.37 -16.14 15 8 C 0.05 1.17 7.43 72.49 0.54 1.71 15 9 O -0.28 -11.52 11.22 -54.01 -0.61 -12.12 15 10 N -0.31 -13.02 5.54 -490.35 -2.72 -15.74 15 11 C 0.18 9.61 5.12 85.56 0.44 10.05 15 12 C -0.52 -30.11 8.81 25.60 0.23 -29.88 15 13 H 0.06 3.76 7.52 -2.91 -0.02 3.74 15 14 C 0.00 0.00 5.46 84.65 0.46 0.46 15 15 N -0.94 -56.81 13.29 21.45 0.28 -56.53 15 16 Si 0.97 45.16 29.54 68.60 2.03 47.18 15 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 15 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.10 1.46 8.14 -2.38 -0.02 1.45 15 23 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.10 2.34 7.85 -2.39 -0.02 2.33 15 25 H -0.03 -1.96 7.83 -2.39 -0.02 -1.98 15 26 H 0.04 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 Total: -1.00 -72.72 243.24 4.24 -68.49 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: 1.16 Total: -3.98 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 3.72 Total: -11.16 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -2.06 Total: -88.41 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.61 Total: -12.12 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.72 4.24 -68.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.764 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds