Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.28652 * 2 1 4 4 C 1.54306 * 110.32262 * 122.12982 * 2 1 3 5 5 H 1.09001 * 110.44429 * 238.41649 * 4 2 1 6 6 C 1.47191 * 110.44744 * 0.94848 * 4 2 1 7 7 N 3.46328 * 65.45139 * 122.86576 * 2 1 3 8 8 C 1.54504 * 104.41294 * 119.68319 * 4 2 1 9 9 O 1.44613 * 103.95606 * 23.37191 * 8 4 2 10 10 N 1.47752 * 104.63011 * 320.96717 * 9 8 4 11 11 C 1.46901 * 110.99643 * 160.67907 * 10 9 8 12 12 C 1.50694 * 109.47439 * 58.15066 * 11 10 9 13 13 H 1.08000 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00314 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00123 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00326 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46971 * 60.00212 * 16 14 12 18 18 H 1.48500 * 109.47344 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47196 * 300.00210 * 16 14 12 20 20 H 1.09001 * 109.47002 * 297.87023 * 1 2 3 21 21 H 1.08993 * 109.46955 * 57.87460 * 1 2 3 22 22 H 1.09000 * 109.47050 * 177.87289 * 1 2 3 23 23 H 1.09005 * 110.52982 * 141.98134 * 8 4 2 24 24 H 1.08997 * 110.53105 * 264.75154 * 8 4 2 25 25 H 1.09001 * 109.47060 * 178.15071 * 11 10 9 26 26 H 1.08998 * 109.46876 * 298.14653 * 11 10 9 27 27 H 0.96992 * 120.00565 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0660 -0.7696 1.2254 5 1 2.6998 -0.1238 1.8331 6 6 0.9514 -1.3001 2.0272 7 7 0.0912 -1.7095 2.6460 8 6 2.8944 -1.9254 0.6214 9 8 3.2506 -1.4478 -0.6963 10 7 2.0447 -0.7414 -1.1757 11 6 2.3744 0.1768 -2.2741 12 6 3.0071 -0.5963 -3.4023 13 1 3.1497 -1.6631 -3.3126 14 6 3.4030 0.0580 -4.5495 15 7 3.2280 1.3569 -4.6593 16 14 4.1866 -0.9003 -5.9483 17 1 3.2363 -1.9330 -6.4342 18 1 4.5188 0.0276 -7.0591 19 1 5.4269 -1.5577 -5.4641 20 1 -0.3633 0.4804 0.9085 21 1 -0.3633 0.5465 -0.8703 22 1 -0.3633 -1.0270 -0.0381 23 1 3.7892 -2.1064 1.2171 24 1 2.2919 -2.8309 0.5500 25 1 1.4641 0.6593 -2.6299 26 1 3.0716 0.9347 -1.9171 27 1 3.5068 1.8173 -5.4662 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546754.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = 12.313934 kcal Electronic energy + Delta-G solvation = -12265.005212 eV Core-core repulsion = 10024.242261 eV Total energy + Delta-G solvation = -2240.762950 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.37076 -37.44730 -35.40235 -34.39985 -32.93730 -29.79513 -27.84803 -24.91959 -23.89959 -22.16651 -18.71899 -18.28124 -17.54274 -16.62481 -16.32603 -15.75799 -15.19487 -15.10506 -14.41128 -14.33167 -13.67102 -13.51155 -13.45791 -13.11837 -12.90861 -12.68639 -12.51105 -12.31931 -12.05659 -11.95245 -11.29013 -11.21760 -10.59352 -9.48374 -8.19836 -6.27132 1.44911 1.47713 1.55625 1.59305 1.70427 2.16953 2.44616 2.74794 3.15380 3.43591 3.56734 3.96812 4.21076 4.30873 4.36099 4.69272 4.73843 4.77905 4.88741 5.03093 5.15719 5.22310 5.62530 5.81163 5.92044 6.34584 6.47349 6.84716 7.40508 8.91732 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.067560 B = 0.008886 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.348698 B = 3150.435071 C = 3372.986729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.013 4.013 5 H 0.166 0.834 6 C 0.250 3.750 7 N -0.468 5.468 8 C 0.049 3.951 9 O -0.261 6.261 10 N -0.329 5.329 11 C 0.182 3.818 12 C -0.521 4.521 13 H 0.058 0.942 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.271 1.271 20 H 0.080 0.920 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.139 0.861 24 H 0.064 0.936 25 H 0.040 0.960 26 H -0.013 1.013 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -2.212 10.107 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 H 0.101 0.899 4 C -0.035 4.035 5 H 0.184 0.816 6 C -0.067 4.067 7 N -0.145 5.145 8 C -0.030 4.030 9 O -0.265 6.265 10 N -0.098 5.098 11 C 0.055 3.945 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.196 1.196 20 H 0.099 0.901 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.156 0.844 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.005 0.995 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.915 -3.095 10.598 11.205 hybrid contribution 1.024 0.673 -0.798 1.462 sum -0.890 -2.422 9.800 10.134 Atomic orbital electron populations 1.21717 0.91964 1.02299 1.02747 1.23294 0.97850 0.97862 0.89582 0.89933 1.20610 0.90621 0.98293 0.94015 0.81646 1.28601 0.93501 0.92500 0.92099 1.81237 1.11292 1.09989 1.11984 1.23626 1.00474 0.94648 0.84254 1.92050 1.30852 1.71564 1.31985 1.71245 1.07975 1.26574 1.04011 1.19918 0.95743 0.90293 0.88556 1.21273 1.39265 0.95019 1.00403 0.92329 1.25803 0.96455 0.95875 1.01117 1.70031 1.48860 1.09241 1.29156 0.85458 0.78979 0.78286 0.78033 1.19477 1.20642 1.19573 0.90127 0.92060 0.92749 0.84364 0.91732 0.94258 0.99485 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.41 71.98 0.61 -3.06 15 2 C 0.02 0.75 3.33 45.11 0.15 0.90 15 3 H 0.08 2.46 7.68 -2.39 -0.02 2.45 15 4 C -0.01 -0.30 3.53 -11.65 -0.04 -0.34 15 5 H 0.17 2.45 8.14 -2.39 -0.02 2.43 15 6 C 0.25 6.15 11.93 89.44 1.07 7.21 15 7 N -0.47 -13.48 18.54 20.00 0.37 -13.11 15 8 C 0.05 1.28 7.43 72.49 0.54 1.82 15 9 O -0.26 -10.41 11.49 -54.04 -0.62 -11.03 15 10 N -0.33 -13.73 5.50 -490.34 -2.70 -16.43 15 11 C 0.18 9.31 4.98 85.55 0.43 9.73 15 12 C -0.52 -29.62 8.88 25.60 0.23 -29.39 15 13 H 0.06 3.37 7.70 -2.91 -0.02 3.35 15 14 C 0.01 0.32 5.46 84.65 0.46 0.78 15 15 N -0.93 -54.68 13.29 21.45 0.28 -54.40 15 16 Si 0.97 44.27 29.54 68.60 2.03 46.30 15 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 20 H 0.08 1.90 7.58 -2.39 -0.02 1.89 15 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.05 1.63 7.53 -2.39 -0.02 1.61 15 23 H 0.14 2.48 8.14 -2.38 -0.02 2.46 15 24 H 0.06 1.69 7.85 -2.39 -0.02 1.67 15 25 H 0.04 2.12 8.14 -2.39 -0.02 2.10 15 26 H -0.01 -0.69 7.97 -2.39 -0.02 -0.71 15 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 Total: -1.00 -66.35 240.82 3.96 -62.40 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 1.16 Total: -1.38 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 3.44 Total: -12.34 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.04 Total: -83.94 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.62 Total: -11.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.35 3.96 -62.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546754.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.709 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds