Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99866 * 2 1 4 4 C 1.52997 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47170 * 180.02562 * 4 3 2 6 6 N 1.30489 * 125.73964 * 269.97589 * 5 4 3 7 7 C 1.34244 * 109.39859 * 180.02562 * 6 5 4 8 8 C 1.34635 * 108.28071 * 359.72775 * 7 6 5 9 9 N 1.36269 * 125.74863 * 89.99575 * 5 4 3 10 10 C 1.37565 * 126.50957 * 359.97438 * 9 5 4 11 11 H 1.07999 * 120.00146 * 0.02562 * 10 9 5 12 12 C 1.38942 * 119.99728 * 179.97438 * 10 9 5 13 13 N 1.31330 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00013 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46819 * 59.99940 * 14 12 10 16 16 H 1.48494 * 109.47285 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00236 * 14 12 10 18 18 H 1.09003 * 109.46789 * 299.99931 * 1 2 3 19 19 H 1.08996 * 109.47229 * 60.00024 * 1 2 3 20 20 H 1.08996 * 109.46612 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47254 * 59.99577 * 3 2 1 22 22 H 1.09007 * 109.46823 * 300.00390 * 3 2 1 23 23 H 1.08997 * 109.47150 * 59.99648 * 4 3 2 24 24 H 1.09002 * 109.46862 * 299.99648 * 4 3 2 25 25 H 1.08003 * 125.85833 * 180.02562 * 7 6 5 26 26 H 1.08001 * 126.58261 * 180.26882 * 8 7 6 27 27 H 0.96996 * 119.99749 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1484 2.5615 0.0000 6 7 4.4584 3.2583 -1.0588 7 6 4.9828 4.4348 -0.6806 8 6 4.9961 4.4781 0.6650 9 7 4.4725 3.2882 1.1063 10 6 4.3020 2.9046 2.4163 11 1 3.8728 1.9404 2.6452 12 6 4.6829 3.7574 3.4450 13 7 5.2052 4.9298 3.1667 14 14 4.4520 3.2364 5.2240 15 1 5.2267 1.9958 5.4809 16 1 4.9344 4.3157 6.1225 17 1 3.0118 2.9830 5.4826 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 1.6886 1.8465 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.8567 0.6440 -0.8908 24 1 3.8574 0.6437 0.8892 25 1 5.3297 5.2148 -1.3422 26 1 5.3527 5.2917 1.2793 27 1 5.4708 5.5252 3.8848 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738968.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = 1.210440 kcal Electronic energy + Delta-G solvation = -12241.740294 eV Core-core repulsion = 10000.495860 eV Total energy + Delta-G solvation = -2241.244434 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.34338 -37.47371 -34.00226 -31.96804 -30.75066 -27.33607 -25.83921 -25.12415 -22.46814 -20.21052 -18.93985 -17.46233 -16.03963 -15.60041 -15.30765 -14.70571 -14.36922 -13.42041 -13.26022 -12.58475 -12.18208 -11.82689 -11.75611 -11.47018 -11.27443 -10.90352 -10.76401 -10.65958 -10.60580 -9.72844 -9.28438 -8.46014 -8.36760 -6.81130 -6.73749 -4.52274 2.91714 2.98917 3.02248 3.64418 3.77172 4.13252 4.60997 4.92041 5.08694 5.47798 5.50482 5.66231 5.77359 5.87285 5.91776 6.13404 6.48741 6.54716 6.82510 6.96082 7.05724 7.49434 7.50790 7.58806 8.27040 8.46547 8.77490 9.42977 9.74293 10.20922 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.013116 C = 0.009399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.486009 B = 2134.335601 C = 2978.435176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.069 3.931 4 C -0.003 4.003 5 C 0.089 3.911 6 N -0.511 5.511 7 C -0.105 4.105 8 C -0.052 4.052 9 N -0.262 5.262 10 C -0.334 4.334 11 H 0.111 0.889 12 C 0.042 3.958 13 N -0.842 5.842 14 Si 0.945 3.055 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.267 1.267 18 H 0.038 0.962 19 H 0.038 0.962 20 H 0.080 0.920 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.142 0.858 26 H 0.194 0.806 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -4.131 0.806 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.008 4.008 4 C -0.042 4.042 5 C -0.167 4.167 6 N -0.232 5.232 7 C -0.257 4.257 8 C -0.195 4.195 9 N 0.072 4.928 10 C -0.464 4.464 11 H 0.128 0.872 12 C -0.167 4.167 13 N -0.474 5.474 14 Si 0.769 3.231 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.192 1.192 18 H 0.057 0.943 19 H 0.056 0.944 20 H 0.099 0.901 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.159 0.841 26 H 0.210 0.790 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.159 -4.477 0.285 6.837 hybrid contribution -0.118 0.556 1.670 1.764 sum -5.278 -3.921 1.955 6.859 Atomic orbital electron populations 1.22662 0.81781 1.02011 0.99832 1.87813 1.19132 1.29134 1.95480 1.22590 0.94325 0.83375 1.00492 1.19273 0.91369 0.90581 1.03015 1.22257 1.14237 0.97739 0.82493 1.69758 1.18796 1.05620 1.29038 1.21805 1.12917 0.97520 0.93503 1.23649 1.08257 0.92800 0.94806 1.41642 1.34640 1.11126 1.05367 1.19996 1.42428 1.04274 0.79695 0.87155 1.25548 0.94648 0.94703 1.01833 1.69721 1.35656 1.07840 1.34180 0.85696 0.79409 0.78779 0.79210 1.19070 1.20103 1.19157 0.94326 0.94378 0.90127 0.93156 0.93149 0.90167 0.90776 0.84066 0.78980 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 15 2 O -0.40 -6.96 10.70 -35.23 -0.38 -7.33 15 3 C 0.07 1.33 5.92 37.16 0.22 1.55 15 4 C 0.00 -0.07 5.83 -27.88 -0.16 -0.23 15 5 C 0.09 2.26 7.16 -154.29 -1.10 1.16 15 6 N -0.51 -13.47 11.24 -10.52 -0.12 -13.59 15 7 C -0.11 -2.70 11.85 -17.77 -0.21 -2.91 15 8 C -0.05 -1.39 10.40 -16.38 -0.17 -1.56 15 9 N -0.26 -7.10 2.93 -58.87 -0.17 -7.27 15 10 C -0.33 -8.73 9.92 -14.72 -0.15 -8.88 15 11 H 0.11 2.69 7.07 -52.49 -0.37 2.32 15 12 C 0.04 1.04 5.48 -17.51 -0.10 0.95 15 13 N -0.84 -21.60 10.19 55.49 0.57 -21.03 15 14 Si 0.94 18.80 29.55 -169.99 -5.02 13.78 15 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 18 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 19 H 0.04 0.46 8.14 -51.93 -0.42 0.04 15 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 24 H 0.07 1.53 7.37 -51.93 -0.38 1.15 15 25 H 0.14 3.17 8.06 -52.48 -0.42 2.74 15 26 H 0.19 5.21 5.60 -52.49 -0.29 4.91 15 27 H 0.28 6.59 8.31 -40.82 -0.34 6.25 15 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -29.33 238.75 -5.23 -34.56 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.14 Total: 5.66 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.56 Total: -8.36 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.27 Total: -41.90 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.38 Total: -7.33 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.33 -5.23 -34.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738968.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.771 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds