Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34048 * 126.77550 * 2 1 4 4 N 1.20918 * 111.56730 * 179.97438 * 3 2 1 5 5 C 1.30176 * 111.60395 * 359.74385 * 4 3 2 6 6 C 1.35451 * 126.78080 * 179.97438 * 2 1 3 7 7 C 1.50704 * 128.00451 * 359.96945 * 6 2 1 8 8 C 1.52998 * 109.46940 * 299.99539 * 7 6 2 9 9 N 1.46899 * 109.46807 * 179.97438 * 7 6 2 10 10 C 1.50693 * 109.47044 * 59.99743 * 7 6 2 11 11 H 1.07997 * 120.00558 * 356.27569 * 10 7 6 12 12 C 1.37883 * 119.99917 * 176.28282 * 10 7 6 13 13 N 1.31512 * 119.99719 * 6.08564 * 12 10 7 14 14 Si 1.86797 * 119.99982 * 185.81227 * 12 10 7 15 15 H 1.48498 * 109.47226 * 265.37275 * 14 12 10 16 16 H 1.48496 * 109.47316 * 25.37673 * 14 12 10 17 17 H 1.48497 * 109.47016 * 145.37769 * 14 12 10 18 18 H 1.09000 * 109.47273 * 269.99788 * 1 2 3 19 19 H 1.08996 * 109.47434 * 29.99665 * 1 2 3 20 20 H 1.09002 * 109.47062 * 150.00179 * 1 2 3 21 21 H 1.08008 * 126.80118 * 180.24661 * 5 4 3 22 22 H 1.08996 * 109.47062 * 186.54287 * 8 7 6 23 23 H 1.08996 * 109.47233 * 306.54202 * 8 7 6 24 24 H 1.09004 * 109.47060 * 66.53998 * 8 7 6 25 25 H 1.00904 * 110.99846 * 176.04233 * 9 7 6 26 26 H 1.00894 * 111.00517 * 299.99680 * 9 7 6 27 27 H 0.97007 * 119.99990 * 179.72994 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6213 -0.5371 0.0063 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0018 8 6 1.0933 -2.8409 1.2517 9 7 3.1305 -3.3750 0.0013 10 6 1.1046 -2.8383 -1.2280 11 1 0.8414 -2.0420 -1.9085 12 6 0.6921 -4.1287 -1.4845 13 7 0.9082 -5.0764 -0.5986 14 14 -0.1805 -4.5293 -3.0868 15 1 -1.6496 -4.4699 -2.8787 16 1 0.2127 -3.5427 -4.1247 17 1 0.2018 -5.8938 -3.5309 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5137 20 1 -0.3633 -0.8900 -0.5138 21 1 4.5529 -1.0838 0.0118 22 1 0.9057 -3.9129 1.3130 23 1 1.6396 -2.5164 2.1372 24 1 0.1439 -2.3085 1.1951 25 1 2.8931 -4.3535 0.0671 26 1 3.6951 -3.1941 -0.8151 27 1 0.6144 -5.9835 -0.7773 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330405.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = 51.400699 kcal Electronic energy + Delta-G solvation = -12796.742385 eV Core-core repulsion = 10557.674364 eV Total energy + Delta-G solvation = -2239.068021 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.03817 -36.34968 -32.73781 -32.30940 -30.89789 -27.43538 -26.93589 -25.32555 -22.79915 -20.87771 -19.02520 -16.85575 -16.31703 -16.20319 -14.96012 -13.99472 -13.69393 -13.31317 -12.72311 -12.56126 -12.18057 -11.64734 -11.38281 -11.20693 -10.99052 -10.75603 -10.42713 -10.33103 -9.94335 -9.75281 -9.37644 -8.67161 -8.11995 -7.24583 -6.15185 -4.31955 2.31594 3.15988 3.22324 3.25821 3.31558 3.96661 4.26616 5.03157 5.21613 5.52195 5.83283 6.04991 6.09074 6.28568 6.39473 6.59835 6.75554 6.85301 7.03518 7.04166 7.44730 7.66082 7.83806 8.07918 8.60144 8.85583 9.04595 9.08492 9.39792 10.80092 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043459 B = 0.013428 C = 0.012303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.125046 B = 2084.708531 C = 2275.395172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.060 4.060 3 O 0.075 5.925 4 N -0.393 5.393 5 C -0.002 4.002 6 C -0.137 4.137 7 C 0.300 3.700 8 C -0.120 4.120 9 N -0.848 5.848 10 C -0.539 4.539 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.274 1.274 17 H -0.285 1.285 18 H 0.073 0.927 19 H 0.065 0.935 20 H 0.107 0.893 21 H 0.183 0.817 22 H 0.082 0.918 23 H 0.014 0.986 24 H 0.036 0.964 25 H 0.358 0.642 26 H 0.314 0.686 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 4.193 0.605 4.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 O 0.011 5.989 4 N -0.100 5.100 5 C -0.180 4.180 6 C -0.141 4.141 7 C 0.208 3.792 8 C -0.178 4.178 9 N -0.378 5.378 10 C -0.578 4.578 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.199 1.199 17 H -0.211 1.211 18 H 0.092 0.908 19 H 0.084 0.916 20 H 0.125 0.875 21 H 0.200 0.800 22 H 0.101 0.899 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.174 0.826 26 H 0.122 0.878 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.052 5.398 1.331 5.560 hybrid contribution -1.089 -1.505 -1.823 2.603 sum -1.141 3.893 -0.491 4.087 Atomic orbital electron populations 1.20344 0.84711 1.04409 1.02949 1.24029 0.95881 0.85606 1.06788 1.84642 1.11523 1.33751 1.68971 1.73731 0.97589 1.17390 1.21255 1.24840 1.00561 0.89568 1.03026 1.21738 0.90796 0.98895 1.02718 1.16666 0.87479 0.81279 0.93776 1.21722 0.97382 1.03688 0.95050 1.59357 1.20934 1.12948 1.44533 1.21771 1.34482 0.93801 1.07781 0.92512 1.24960 0.95305 0.96311 0.96684 1.69722 1.47333 1.01981 1.33634 0.86542 0.79799 0.77799 0.83698 1.20554 1.19911 1.21089 0.90831 0.91643 0.87465 0.79993 0.89921 0.96680 0.94477 0.82551 0.87767 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.05 36.00 0.33 -0.78 15 2 C -0.06 -1.20 7.32 -35.30 -0.26 -1.46 15 3 O 0.08 1.52 11.20 17.16 0.19 1.72 15 4 N -0.39 -8.19 12.07 30.36 0.37 -7.82 15 5 C 0.00 -0.05 11.42 -17.06 -0.19 -0.24 15 6 C -0.14 -3.00 4.82 -104.42 -0.50 -3.50 15 7 C 0.30 6.99 0.73 -133.91 -0.10 6.90 15 8 C -0.12 -2.76 8.26 37.16 0.31 -2.46 15 9 N -0.85 -19.30 8.38 -1.14 -0.01 -19.31 15 10 C -0.54 -13.42 6.78 -34.44 -0.23 -13.66 15 11 H 0.06 1.45 7.29 -52.49 -0.38 1.06 15 12 C 0.07 1.75 5.22 -17.82 -0.09 1.66 15 13 N -0.89 -22.56 9.69 55.43 0.54 -22.02 15 14 Si 0.89 19.87 29.54 -169.99 -5.02 14.84 15 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 18 H 0.07 1.09 8.13 -51.93 -0.42 0.67 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 20 H 0.11 1.96 6.11 -51.93 -0.32 1.64 15 21 H 0.18 3.43 8.03 -52.48 -0.42 3.01 15 22 H 0.08 2.05 6.34 -51.93 -0.33 1.72 15 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 24 H 0.04 0.80 6.73 -51.93 -0.35 0.45 15 25 H 0.36 8.63 6.94 -39.29 -0.27 8.36 15 26 H 0.31 6.90 8.80 -39.29 -0.35 6.56 15 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 LS Contribution 228.75 15.07 3.45 3.45 Total: -1.00 -26.15 228.75 -4.06 -30.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -2.82 Total: 12.48 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.75 Total: -13.55 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.89 Total: -49.15 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -26.15 -4.06 -30.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330405.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.610 kcal (2) G-P(sol) polarization free energy of solvation -26.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds