Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46644 * 2 1 4 4 C 1.34520 * 125.78639 * 90.00585 * 3 2 1 5 5 C 1.41381 * 106.83580 * 180.22245 * 4 3 2 6 6 C 1.34513 * 106.84363 * 359.57150 * 5 4 3 7 7 C 1.50697 * 125.78872 * 180.11927 * 6 5 4 8 8 H 1.09000 * 109.47095 * 340.33617 * 7 6 5 9 9 O 1.42901 * 109.47093 * 220.34015 * 7 6 5 10 10 C 1.50697 * 109.47381 * 100.33664 * 7 6 5 11 11 H 1.07997 * 120.00071 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99967 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00143 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99688 * 180.02562 * 12 10 7 15 15 H 1.48507 * 109.47316 * 60.00337 * 14 12 10 16 16 H 1.48502 * 109.46776 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47209 * 299.99846 * 14 12 10 18 18 O 1.34302 * 125.79150 * 269.95626 * 3 2 1 19 19 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 20 20 H 1.08991 * 109.47036 * 299.99550 * 1 2 3 21 21 H 1.09001 * 109.47148 * 59.99965 * 1 2 3 22 22 H 1.09002 * 109.47199 * 239.99938 * 2 1 3 23 23 H 1.09001 * 109.47148 * 120.00035 * 2 1 3 24 24 H 1.08002 * 126.57789 * 359.95308 * 4 3 2 25 25 H 1.08009 * 126.57222 * 179.73218 * 5 4 3 26 26 H 0.96703 * 114.00026 * 300.00200 * 9 7 6 27 27 H 0.97000 * 120.00317 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7352 3.4250 0.6321 6 6 2.7249 3.3762 -0.7121 7 6 3.1215 4.4973 -1.6377 8 1 3.0833 5.4441 -1.0988 9 8 2.2191 4.5428 -2.7448 10 6 4.5223 4.2618 -2.1408 11 1 5.0705 3.3875 -1.8225 12 6 5.1038 5.1620 -3.0083 13 7 4.4361 6.2265 -3.3963 14 14 6.8400 4.8696 -3.6324 15 1 6.8916 3.5796 -4.3664 16 1 7.2303 5.9739 -4.5454 17 1 7.7781 4.8226 -2.4822 18 8 2.2948 2.1611 -1.0894 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.1849 1.8542 2.1205 25 1 3.0268 4.2663 1.2435 26 1 2.2006 3.7315 -3.2708 27 1 4.8449 6.8596 -4.0069 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = -73.384911 kcal Electronic energy + Delta-G solvation = -12189.384196 eV Core-core repulsion = 9912.612314 eV Total energy + Delta-G solvation = -2276.771882 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.40665 -37.72070 -34.95648 -34.39511 -33.70087 -30.68911 -28.06981 -25.31725 -23.39319 -22.55165 -20.92313 -19.25081 -18.02308 -16.86519 -16.74645 -16.19018 -15.48614 -15.23953 -14.92162 -13.98120 -13.85236 -13.60732 -13.45764 -13.19604 -13.01178 -12.80008 -12.37182 -12.15794 -11.88386 -11.57074 -10.85798 -10.71745 -10.54322 -9.09532 -8.21781 -6.52066 0.91758 1.39332 1.41477 1.50312 1.78055 2.13633 2.36906 3.02314 3.81616 4.05543 4.18232 4.24044 4.34870 4.41624 4.64370 4.89946 4.94606 5.02229 5.08632 5.29080 5.37100 5.40285 5.55334 5.76245 5.87391 6.40769 6.54589 7.15514 7.31421 8.80643 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.054945 B = 0.009210 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.481968 B = 3039.418632 C = 3128.147119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.043 4.043 4 C -0.211 4.211 5 C -0.243 4.243 6 C -0.023 4.023 7 C 0.301 3.699 8 H 0.063 0.937 9 O -0.572 6.572 10 C -0.587 4.587 11 H 0.053 0.947 12 C 0.032 3.968 13 N -0.895 5.895 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.267 1.267 18 O -0.190 6.190 19 H 0.090 0.910 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.174 0.826 25 H 0.148 0.852 26 H 0.361 0.639 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -10.902 6.445 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.092 4.092 4 C -0.230 4.230 5 C -0.262 4.262 6 C -0.073 4.073 7 C 0.243 3.757 8 H 0.081 0.919 9 O -0.376 6.376 10 C -0.624 4.624 11 H 0.071 0.929 12 C -0.171 4.171 13 N -0.530 5.530 14 Si 0.792 3.208 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.192 1.192 18 O -0.088 6.088 19 H 0.109 0.891 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.100 0.900 23 H 0.135 0.865 24 H 0.191 0.809 25 H 0.166 0.834 26 H 0.207 0.793 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.091 -10.221 6.287 12.678 hybrid contribution 1.036 -0.042 -0.376 1.103 sum -3.055 -10.262 5.912 12.231 Atomic orbital electron populations 1.21773 0.93164 1.03398 1.01874 1.20237 0.96951 0.85094 1.05109 1.23319 1.05144 0.96809 0.83944 1.21768 1.07396 0.93496 1.00363 1.21754 1.09897 1.00874 0.93650 1.24193 1.00685 0.85871 0.96565 1.18000 0.87868 0.87950 0.81846 0.91926 1.86490 1.65128 1.41971 1.44018 1.21712 1.00207 1.09650 1.30826 0.92907 1.25900 1.02096 0.93893 0.95243 1.70165 1.38753 1.11844 1.32287 0.85473 0.78711 0.78166 0.78437 1.19318 1.20124 1.19160 1.83915 1.65643 1.22755 1.36482 0.89085 0.92181 0.94076 0.90048 0.86523 0.80878 0.83427 0.79318 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.18 15 2 C -0.04 -0.86 6.47 29.85 0.19 -0.66 15 3 C -0.04 -1.49 6.57 24.83 0.16 -1.33 15 4 C -0.21 -7.30 10.81 22.19 0.24 -7.06 15 5 C -0.24 -10.19 10.80 22.19 0.24 -9.95 15 6 C -0.02 -1.08 6.12 24.83 0.15 -0.93 15 7 C 0.30 16.55 3.29 29.10 0.10 16.64 15 8 H 0.06 3.67 8.13 -2.39 -0.02 3.65 15 9 O -0.57 -31.72 12.72 -146.93 -1.87 -33.59 15 10 C -0.59 -33.69 8.75 25.60 0.22 -33.46 15 11 H 0.05 3.03 7.74 -2.91 -0.02 3.00 15 12 C 0.03 1.82 5.40 84.66 0.46 2.28 15 13 N -0.89 -53.23 12.84 21.45 0.28 -52.95 15 14 Si 0.97 43.61 29.54 68.60 2.03 45.64 15 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 18 O -0.19 -8.47 10.58 -0.41 0.00 -8.47 15 19 H 0.09 1.27 8.14 -2.38 -0.02 1.25 15 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.17 4.53 8.06 -2.91 -0.02 4.50 15 25 H 0.15 5.75 8.06 -2.91 -0.02 5.73 15 26 H 0.36 18.15 8.97 -74.06 -0.66 17.49 15 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -66.94 245.07 3.41 -63.54 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.50 Total: 22.50 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 2.48 Total: -36.66 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.28 Total: -52.95 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.87 Total: -42.06 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.94 3.41 -63.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.849 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds