Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46912 * 2 1 4 4 C 1.35048 * 126.39567 * 265.00146 * 3 2 1 5 5 N 1.30503 * 108.69769 * 180.02562 * 4 3 2 6 6 C 1.34126 * 109.25709 * 359.75256 * 5 4 3 7 7 C 1.34665 * 108.01996 * 0.40133 * 6 5 4 8 8 C 1.50707 * 126.59160 * 179.87779 * 7 6 5 9 9 H 1.09002 * 109.46993 * 204.68580 * 8 7 6 10 10 O 1.42901 * 109.46725 * 324.68098 * 8 7 6 11 11 C 1.50696 * 109.47007 * 84.67956 * 8 7 6 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.09008 * 109.46845 * 300.00143 * 1 2 3 20 20 H 1.08997 * 109.47037 * 60.00087 * 1 2 3 21 21 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46677 * 240.00152 * 2 1 3 23 23 H 1.08997 * 109.47037 * 119.99913 * 2 1 3 24 24 H 1.07998 * 125.65146 * 359.97438 * 4 3 2 25 25 H 1.08001 * 125.99058 * 180.24865 * 6 5 4 26 26 H 0.96709 * 114.00052 * 60.00302 * 10 8 7 27 27 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3747 2.1051 -1.0829 5 7 2.7570 3.2886 -0.6877 6 6 2.6543 3.3637 0.6476 7 6 2.1991 2.1789 1.0976 8 6 1.9334 1.8051 2.5332 9 1 2.0022 0.7231 2.6457 10 8 2.9011 2.4341 3.3759 11 6 0.5524 2.2642 2.9244 12 1 -0.0708 2.7750 2.2054 13 6 0.0845 2.0319 4.2005 14 7 -1.1209 2.4321 4.5418 15 14 1.1627 1.1490 5.4443 16 1 0.9226 -0.3139 5.3576 17 1 2.5906 1.4344 5.1527 18 1 0.8322 1.6246 6.8118 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.3485 1.7613 -2.1064 25 1 2.8966 4.2228 1.2555 26 1 2.8968 3.3999 3.3270 27 1 -1.4502 2.2683 5.4394 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = 9.393870 kcal Electronic energy + Delta-G solvation = -12612.465323 eV Core-core repulsion = 10371.575749 eV Total energy + Delta-G solvation = -2240.889574 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.43966 -36.06809 -34.46807 -32.35819 -29.94126 -29.23064 -26.74072 -23.37987 -22.63973 -20.69245 -19.10574 -17.59834 -16.57632 -14.92586 -14.84480 -14.69722 -14.08069 -13.63147 -13.07623 -12.89029 -12.73474 -12.21956 -11.89634 -11.65827 -11.21744 -10.96826 -10.68915 -10.45949 -9.43300 -9.20654 -8.97931 -8.77130 -8.57478 -7.53496 -6.22228 -4.34970 2.75845 3.29599 3.35725 3.41511 3.66089 3.83387 4.42965 4.95642 5.08821 5.19439 5.32103 5.42567 5.48000 5.77282 5.95267 5.98704 6.11847 6.35644 6.56790 6.69966 7.27785 7.38464 7.44178 7.83183 8.20020 8.68361 8.73183 8.89695 9.39465 10.87533 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039892 B = 0.013834 C = 0.012247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.727440 B = 2023.481470 C = 2285.731263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.453 5.453 4 C 0.149 3.851 5 N -0.498 5.498 6 C -0.048 4.048 7 C 0.009 3.991 8 C 0.263 3.737 9 H 0.058 0.942 10 O -0.571 6.571 11 C -0.555 4.555 12 H 0.075 0.925 13 C 0.087 3.913 14 N -0.886 5.886 15 Si 0.866 3.134 16 H -0.286 1.286 17 H -0.217 1.217 18 H -0.292 1.292 19 H 0.087 0.913 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.194 0.806 25 H 0.161 0.839 26 H 0.362 0.638 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -5.349 -6.676 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.138 5.138 4 C -0.132 4.132 5 N -0.217 5.217 6 C -0.194 4.194 7 C -0.106 4.106 8 C 0.205 3.795 9 H 0.076 0.924 10 O -0.376 6.376 11 C -0.592 4.592 12 H 0.093 0.907 13 C -0.119 4.119 14 N -0.522 5.522 15 Si 0.692 3.308 16 H -0.213 1.213 17 H -0.140 1.140 18 H -0.219 1.219 19 H 0.106 0.894 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.211 0.789 25 H 0.179 0.821 26 H 0.210 0.790 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.995 -5.454 -6.906 10.118 hybrid contribution -0.282 -0.561 0.918 1.112 sum 4.713 -6.015 -5.988 9.708 Atomic orbital electron populations 1.22201 0.93862 1.02602 1.04487 1.21720 0.96168 0.80314 1.03458 1.45366 1.48907 1.12468 1.07059 1.24611 1.06077 0.89250 0.93271 1.70116 1.20759 1.18328 1.12456 1.21747 1.09351 0.97613 0.90718 1.22625 1.03732 0.92458 0.91825 1.18169 0.88610 0.93723 0.79043 0.92407 1.86708 1.61325 1.23639 1.65955 1.21316 0.98156 1.40819 0.98917 0.90685 1.24980 0.94584 0.94029 0.98266 1.69940 1.17045 1.44996 1.20209 0.87098 0.84985 0.78938 0.79748 1.21305 1.13969 1.21860 0.89394 0.92560 0.91371 0.89799 0.89466 0.78944 0.82119 0.79014 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 15 2 C 0.11 1.52 6.64 -4.04 -0.03 1.50 15 3 N -0.45 -8.21 2.75 -113.99 -0.31 -8.53 15 4 C 0.15 2.60 12.56 -90.37 -1.13 1.47 15 5 N -0.50 -10.17 11.25 -14.67 -0.16 -10.33 15 6 C -0.05 -1.01 11.26 -17.81 -0.20 -1.21 15 7 C 0.01 0.20 5.95 -81.60 -0.49 -0.29 15 8 C 0.26 6.06 2.62 -29.03 -0.08 5.98 15 9 H 0.06 1.33 6.64 -51.93 -0.34 0.99 15 10 O -0.57 -12.78 10.02 -35.23 -0.35 -13.13 15 11 C -0.55 -14.83 9.04 -34.44 -0.31 -15.14 15 12 H 0.08 2.25 7.98 -52.49 -0.42 1.83 15 13 C 0.09 2.39 5.47 -17.82 -0.10 2.30 15 14 N -0.89 -26.08 13.96 55.43 0.77 -25.31 15 15 Si 0.87 20.80 26.99 -169.99 -4.59 16.21 15 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.22 -5.12 5.30 56.52 0.30 -4.82 15 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 19 H 0.09 1.67 7.86 -51.92 -0.41 1.26 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.08 0.90 8.13 -51.93 -0.42 0.47 15 23 H 0.09 1.26 7.29 -51.93 -0.38 0.88 15 24 H 0.19 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.16 3.12 7.61 -52.49 -0.40 2.72 15 26 H 0.36 7.18 8.24 45.56 0.38 7.56 15 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 234.66 15.07 3.54 3.54 Total: -1.00 -31.91 234.66 -5.56 -37.47 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -2.50 Total: 7.66 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.95 Total: -7.58 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.29 Total: -44.17 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.35 Total: -13.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.59 Total: 16.21 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.91 -5.56 -37.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.863 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds