Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46912 * 2 1 4 4 C 1.35048 * 126.39567 * 265.00146 * 3 2 1 5 5 N 1.30503 * 108.69769 * 180.02562 * 4 3 2 6 6 C 1.34126 * 109.25709 * 359.75256 * 5 4 3 7 7 C 1.34665 * 108.01996 * 0.40133 * 6 5 4 8 8 C 1.50707 * 126.59160 * 179.87779 * 7 6 5 9 9 H 1.09002 * 109.46993 * 204.68580 * 8 7 6 10 10 O 1.42901 * 109.46725 * 324.68098 * 8 7 6 11 11 C 1.50696 * 109.47007 * 84.67956 * 8 7 6 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.09008 * 109.46845 * 300.00143 * 1 2 3 20 20 H 1.08997 * 109.47037 * 60.00087 * 1 2 3 21 21 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46677 * 240.00152 * 2 1 3 23 23 H 1.08997 * 109.47037 * 119.99913 * 2 1 3 24 24 H 1.07998 * 125.65146 * 359.97438 * 4 3 2 25 25 H 1.08001 * 125.99058 * 180.24865 * 6 5 4 26 26 H 0.96709 * 114.00052 * 60.00302 * 10 8 7 27 27 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3747 2.1051 -1.0829 5 7 2.7570 3.2886 -0.6877 6 6 2.6543 3.3637 0.6476 7 6 2.1991 2.1789 1.0976 8 6 1.9334 1.8051 2.5332 9 1 2.0022 0.7231 2.6457 10 8 2.9011 2.4341 3.3759 11 6 0.5524 2.2642 2.9244 12 1 -0.0708 2.7750 2.2054 13 6 0.0845 2.0319 4.2005 14 7 -1.1209 2.4321 4.5418 15 14 1.1627 1.1490 5.4443 16 1 0.9226 -0.3139 5.3576 17 1 2.5906 1.4344 5.1527 18 1 0.8322 1.6246 6.8118 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.3485 1.7613 -2.1064 25 1 2.8966 4.2228 1.2555 26 1 2.8968 3.3999 3.3270 27 1 -1.4502 2.2683 5.4394 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -13.351150 kcal Electronic energy + Delta-G solvation = -12613.451621 eV Core-core repulsion = 10371.575749 eV Total energy + Delta-G solvation = -2241.875872 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.91072 -37.89068 -35.77934 -34.46551 -31.52371 -30.67211 -28.59805 -24.75207 -24.40097 -22.13669 -20.66767 -19.53186 -18.12589 -16.89155 -16.33858 -16.23340 -15.73047 -15.09870 -14.82696 -14.48376 -14.21609 -13.82189 -13.51477 -13.08402 -12.91581 -12.68343 -12.36523 -12.04274 -11.34564 -10.94978 -10.79634 -10.49587 -10.34778 -9.12572 -8.36527 -6.52977 1.26219 1.38804 1.46149 1.74095 2.03979 2.30199 2.41429 2.99950 3.84583 3.89657 3.93689 4.02966 4.19336 4.39385 4.52049 4.70068 4.76933 4.86080 5.14196 5.34920 5.35452 5.66268 5.84867 6.07596 6.48748 6.58818 7.04445 7.21822 7.26510 8.77148 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039892 B = 0.013834 C = 0.012247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.727440 B = 2023.481470 C = 2285.731263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.454 5.454 4 C 0.170 3.830 5 N -0.531 5.531 6 C -0.061 4.061 7 C -0.021 4.021 8 C 0.276 3.724 9 H 0.062 0.938 10 O -0.573 6.573 11 C -0.547 4.547 12 H 0.028 0.972 13 C 0.034 3.966 14 N -0.934 5.934 15 Si 0.935 3.065 16 H -0.278 1.278 17 H -0.207 1.207 18 H -0.295 1.295 19 H 0.034 0.966 20 H 0.061 0.939 21 H 0.098 0.902 22 H 0.135 0.865 23 H 0.085 0.915 24 H 0.244 0.756 25 H 0.164 0.836 26 H 0.373 0.627 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 -7.012 -7.792 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.138 5.138 4 C -0.111 4.111 5 N -0.250 5.250 6 C -0.207 4.207 7 C -0.138 4.138 8 C 0.217 3.783 9 H 0.080 0.920 10 O -0.379 6.379 11 C -0.585 4.585 12 H 0.046 0.954 13 C -0.166 4.166 14 N -0.573 5.573 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.129 1.129 18 H -0.222 1.222 19 H 0.053 0.947 20 H 0.080 0.920 21 H 0.117 0.883 22 H 0.153 0.847 23 H 0.104 0.896 24 H 0.260 0.740 25 H 0.181 0.819 26 H 0.222 0.778 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.410 -7.126 -8.027 12.502 hybrid contribution -0.767 -0.016 1.121 1.358 sum 5.643 -7.142 -6.906 11.426 Atomic orbital electron populations 1.22125 0.94465 1.03854 1.02019 1.22087 0.95579 0.78643 1.05907 1.45606 1.48335 1.13662 1.06215 1.25598 1.02658 0.88058 0.94803 1.70124 1.22720 1.20248 1.11907 1.21953 1.09362 0.97808 0.91540 1.22315 1.05952 0.93564 0.91940 1.17803 0.86349 0.93656 0.80478 0.92020 1.86630 1.60621 1.24687 1.65989 1.21405 0.99593 1.39627 0.97829 0.95376 1.25816 0.95652 0.94838 1.00299 1.70069 1.19105 1.47193 1.20892 0.86039 0.83431 0.77912 0.76771 1.20437 1.12885 1.22191 0.94713 0.92015 0.88298 0.84736 0.89647 0.74019 0.81897 0.77810 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 10.24 71.98 0.74 -3.88 15 2 C 0.10 2.52 6.64 86.38 0.57 3.10 15 3 N -0.45 -15.44 2.75 -514.56 -1.42 -16.86 15 4 C 0.17 5.41 12.56 180.26 2.26 7.67 15 5 N -0.53 -20.83 11.25 -200.31 -2.25 -23.08 15 6 C -0.06 -2.53 11.26 83.52 0.94 -1.59 15 7 C -0.02 -0.89 5.95 40.95 0.24 -0.65 15 8 C 0.28 12.61 2.62 29.10 0.08 12.68 15 9 H 0.06 2.77 6.64 -2.39 -0.02 2.75 15 10 O -0.57 -24.98 10.02 -148.98 -1.49 -26.47 15 11 C -0.55 -30.01 9.04 25.60 0.23 -29.77 15 12 H 0.03 1.77 7.98 -2.91 -0.02 1.74 15 13 C 0.03 1.93 5.47 84.66 0.46 2.39 15 14 N -0.93 -56.60 13.96 21.45 0.30 -56.30 15 15 Si 0.94 43.10 26.99 68.60 1.85 44.95 15 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 17 H -0.21 -9.13 5.30 99.48 0.53 -8.60 15 18 H -0.30 -13.68 7.11 99.48 0.71 -12.98 15 19 H 0.03 1.33 7.86 -2.38 -0.02 1.31 15 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.13 2.13 8.13 -2.39 -0.02 2.11 15 23 H 0.09 2.23 7.29 -2.39 -0.02 2.22 15 24 H 0.24 4.92 8.06 -2.91 -0.02 4.89 15 25 H 0.16 6.40 7.61 -2.91 -0.02 6.38 15 26 H 0.37 14.58 8.24 -74.05 -0.61 13.97 15 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 Total: -1.00 -70.44 234.66 2.90 -67.54 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.38 Total: 20.27 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 5.53 Total: -10.05 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -3.37 Total: -96.24 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.49 Total: -26.47 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.85 Total: 44.95 kcal Total: -70.44 2.90 -67.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.192 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds