Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30167 * 126.80230 * 2 1 4 4 O 1.20923 * 111.60489 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56491 * 359.76525 * 4 3 2 6 6 C 1.50703 * 126.77374 * 180.28294 * 5 4 3 7 7 C 1.35446 * 106.44794 * 0.37891 * 5 4 3 8 8 C 1.50698 * 128.00954 * 179.90968 * 7 5 4 9 9 N 1.46493 * 109.47084 * 269.67693 * 8 7 5 10 10 C 1.36945 * 119.99892 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99422 * 359.72792 * 10 9 8 12 12 C 1.38811 * 120.00031 * 179.72716 * 10 9 8 13 13 N 1.31616 * 119.99707 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99814 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47151 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47196 * 120.00214 * 14 12 10 17 17 H 1.48500 * 109.46879 * 240.00070 * 14 12 10 18 18 H 1.09007 * 109.47236 * 269.97549 * 1 2 3 19 19 H 1.08997 * 109.47092 * 29.97363 * 1 2 3 20 20 H 1.08998 * 109.47572 * 149.97355 * 1 2 3 21 21 H 1.08998 * 109.47216 * 270.10886 * 6 5 4 22 22 H 1.08992 * 109.47155 * 30.11578 * 6 5 4 23 23 H 1.08998 * 109.46464 * 150.11587 * 6 5 4 24 24 H 1.08998 * 109.47083 * 149.67459 * 8 7 5 25 25 H 1.09001 * 109.46875 * 29.67722 * 8 7 5 26 26 H 0.97000 * 120.00738 * 359.73120 * 9 8 7 27 27 H 0.97004 * 119.99151 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3696 0.0111 7 6 2.3539 -1.1321 -0.0007 8 6 1.9590 -2.5864 -0.0003 9 7 1.8297 -3.0577 -1.3813 10 6 1.4772 -4.3572 -1.6312 11 1 1.2987 -5.0356 -0.8100 12 6 1.3492 -4.8023 -2.9398 13 7 1.5672 -3.9755 -3.9403 14 14 0.8675 -6.5747 -3.2805 15 1 0.6812 -7.2930 -1.9942 16 1 -0.4007 -6.6033 -4.0524 17 1 1.9400 -7.2367 -4.0658 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3634 -0.8897 -0.5142 21 1 5.2201 -1.5551 -1.0149 22 1 5.6636 -0.7853 0.5275 23 1 4.7626 -2.3203 0.5256 24 1 1.0054 -2.7038 0.5145 25 1 2.7231 -3.1703 0.5129 26 1 1.9904 -2.4485 -2.1188 27 1 1.4781 -4.2867 -4.8547 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086110678.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = 40.774143 kcal Electronic energy + Delta-G solvation = -12196.554344 eV Core-core repulsion = 9957.025521 eV Total energy + Delta-G solvation = -2239.528823 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.87387 -37.38856 -35.42445 -34.45396 -32.65288 -29.62617 -29.05910 -27.36949 -24.85073 -22.40355 -21.01367 -19.33057 -18.62355 -17.81309 -16.62565 -15.63319 -15.42703 -15.12999 -14.61253 -14.27988 -13.90104 -13.69552 -13.60546 -13.32876 -13.12628 -12.79971 -12.74897 -12.04630 -11.95291 -11.86226 -10.97673 -10.81386 -10.11408 -9.02153 -7.93894 -5.24189 0.50322 1.20293 1.51039 1.51261 1.61678 2.20695 2.59073 3.24985 3.40269 3.60218 3.99020 4.15235 4.21712 4.41667 4.63526 4.65869 4.70551 4.76575 4.87403 4.94797 5.15100 5.18611 5.29885 5.51541 6.26021 7.30095 7.33400 8.04503 8.30483 9.29884 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048830 B = 0.009311 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.278734 B = 3006.359292 C = 3264.706788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.023 3.977 3 N -0.397 5.397 4 O 0.084 5.916 5 C -0.015 4.015 6 C -0.068 4.068 7 C -0.222 4.222 8 C 0.232 3.768 9 N -0.737 5.737 10 C -0.242 4.242 11 H 0.083 0.917 12 C -0.074 4.074 13 N -0.971 5.971 14 Si 0.976 3.024 15 H -0.262 1.262 16 H -0.296 1.296 17 H -0.294 1.294 18 H 0.100 0.900 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.109 0.891 23 H 0.099 0.901 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.371 0.629 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 4.708 9.510 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 N -0.106 5.106 4 O 0.023 5.977 5 C -0.079 4.079 6 C -0.125 4.125 7 C -0.226 4.226 8 C 0.105 3.895 9 N -0.380 5.380 10 C -0.374 4.374 11 H 0.101 0.899 12 C -0.267 4.267 13 N -0.622 5.622 14 Si 0.805 3.195 15 H -0.186 1.186 16 H -0.223 1.223 17 H -0.221 1.221 18 H 0.118 0.882 19 H 0.099 0.901 20 H 0.094 0.906 21 H 0.106 0.894 22 H 0.128 0.872 23 H 0.117 0.883 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.202 0.798 27 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.978 5.846 9.596 11.624 hybrid contribution -0.393 -1.297 -0.881 1.617 sum 2.585 4.549 8.715 10.165 Atomic orbital electron populations 1.20218 0.84675 1.03799 1.04290 1.23889 1.00128 0.88430 1.01154 1.73740 0.89766 1.24491 1.22631 1.84707 1.21379 1.23180 1.68433 1.24881 0.99456 0.83137 1.00443 1.20485 0.88593 0.98662 1.04754 1.21326 0.92436 0.97930 1.10932 1.18919 0.98356 0.85262 0.86913 1.42539 1.83707 1.09711 1.02023 1.19704 1.37297 0.88182 0.92168 0.89899 1.25587 1.03475 1.02089 0.95513 1.69852 1.57839 1.36211 0.98311 0.85039 0.76732 0.79782 0.77969 1.18638 1.22347 1.22134 0.88206 0.90092 0.90633 0.89404 0.87237 0.88290 0.94543 0.93586 0.79795 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 10.39 71.24 0.74 -1.42 15 2 C 0.02 0.82 7.33 43.58 0.32 1.14 15 3 N -0.40 -14.42 12.07 -49.57 -0.60 -15.02 15 4 O 0.08 2.86 11.20 71.59 0.80 3.66 15 5 C -0.01 -0.48 7.49 25.04 0.19 -0.29 15 6 C -0.07 -1.60 10.30 71.24 0.73 -0.87 15 7 C -0.22 -8.07 5.69 -19.74 -0.11 -8.19 15 8 C 0.23 9.17 6.58 85.63 0.56 9.73 15 9 N -0.74 -36.94 5.59 -347.19 -1.94 -38.88 15 10 C -0.24 -13.12 9.99 84.03 0.84 -12.28 15 11 H 0.08 4.23 7.83 -2.91 -0.02 4.21 15 12 C -0.07 -4.20 5.50 84.86 0.47 -3.73 15 13 N -0.97 -59.23 13.06 21.65 0.28 -58.95 15 14 Si 0.98 45.15 29.55 68.60 2.03 47.18 15 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 16 H -0.30 -13.82 7.11 99.48 0.71 -13.12 15 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 18 H 0.10 2.43 8.14 -2.38 -0.02 2.41 15 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 21 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.10 2.22 7.43 -2.39 -0.02 2.21 15 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.05 1.70 7.44 -2.39 -0.02 1.69 15 26 H 0.37 20.47 7.66 -92.71 -0.71 19.76 15 27 H 0.25 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -64.96 243.59 4.77 -60.18 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.47 Total: 17.73 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 3.74 Total: -15.90 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.26 Total: -112.85 kcal Atomic # 8 Polarization: 2.86 SS G_CDS: 0.80 Total: 3.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.96 4.77 -60.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110678.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.955 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds