Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35316 * 126.13134 * 2 1 4 4 C 1.50703 * 126.03429 * 0.02562 * 3 2 1 5 5 H 1.09002 * 109.47207 * 35.00509 * 4 3 2 6 6 O 1.42902 * 109.46751 * 155.00407 * 4 3 2 7 7 C 1.50699 * 109.47288 * 275.00156 * 4 3 2 8 8 H 1.08001 * 120.00129 * 0.02562 * 7 4 3 9 9 C 1.37875 * 119.99860 * 180.02562 * 7 4 3 10 10 N 1.31516 * 120.00103 * 359.97438 * 9 7 4 11 11 Si 1.86804 * 119.99981 * 180.02562 * 9 7 4 12 12 H 1.48501 * 109.47003 * 59.99574 * 11 9 7 13 13 H 1.48496 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46895 * 299.99664 * 11 9 7 15 15 C 1.39868 * 107.92272 * 180.02562 * 3 2 1 16 16 N 1.30837 * 108.20148 * 359.97438 * 15 3 2 17 17 N 1.34954 * 126.12498 * 180.02562 * 2 1 3 18 18 C 1.46494 * 126.03475 * 359.71576 * 17 2 1 19 19 H 1.09004 * 109.47514 * 270.00307 * 1 2 3 20 20 H 1.09001 * 109.47090 * 30.00190 * 1 2 3 21 21 H 1.09003 * 109.47687 * 149.99726 * 1 2 3 22 22 H 0.96697 * 114.00451 * 59.99682 * 6 4 3 23 23 H 0.97002 * 119.99805 * 180.02562 * 10 9 7 24 24 H 1.08001 * 125.89990 * 179.97438 * 15 3 2 25 25 H 1.09007 * 109.47152 * 90.00174 * 18 17 2 26 26 H 1.09004 * 109.47324 * 209.99797 * 18 17 2 27 27 H 1.08997 * 109.47734 * 329.99813 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 1 0.9309 2.6154 0.5904 6 8 2.8601 3.3547 0.5697 7 6 1.5710 2.9682 -1.4146 8 1 1.7171 2.2783 -2.2326 9 6 1.1353 4.2521 -1.6651 10 7 0.9569 5.0920 -0.6689 11 14 0.7971 4.7982 -3.4192 12 1 -0.2601 3.9388 -4.0100 13 1 0.3425 6.2118 -3.4186 14 1 2.0397 4.6777 -4.2234 15 6 3.6335 0.6558 -0.0006 16 7 3.6333 -0.6525 -0.0004 17 7 2.3026 -1.0901 -0.0005 18 6 1.8538 -2.4846 0.0048 19 1 -0.3634 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3634 -0.8900 -0.5139 22 1 3.7020 3.3260 0.0950 23 1 0.6501 5.9952 -0.8452 24 1 4.5084 1.2890 -0.0011 25 1 1.7384 -2.8330 -1.0216 26 1 2.5917 -3.1019 0.5172 27 1 0.8974 -2.5566 0.5226 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086553414.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 21.510147 kcal Electronic energy + Delta-G solvation = -12400.399302 eV Core-core repulsion = 10160.035130 eV Total energy + Delta-G solvation = -2240.364173 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.55302 -35.53300 -32.78145 -32.05951 -31.46792 -27.64127 -26.13745 -25.47993 -22.40699 -19.93719 -18.73470 -16.89401 -15.98009 -15.02997 -14.59447 -14.25767 -13.68703 -13.31214 -12.90627 -12.72256 -12.25466 -12.01724 -11.90498 -11.41054 -11.16109 -10.91939 -10.86719 -10.21088 -10.02877 -9.12370 -8.59827 -8.58154 -8.26826 -7.33681 -5.94645 -4.13035 2.51443 3.10629 3.31832 3.37084 3.38931 3.65160 4.45052 4.94009 5.28979 5.35415 5.36413 5.53786 5.63713 5.74956 6.00473 6.31635 6.40197 6.54501 6.57428 6.97387 7.37729 7.71823 7.80252 7.90920 8.25754 8.39796 8.90534 9.43540 9.63823 11.07793 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.046206 B = 0.011102 C = 0.010310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.837910 B = 2521.455660 C = 2715.241167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.064 3.936 3 C -0.216 4.216 4 C 0.296 3.704 5 H 0.061 0.939 6 O -0.562 6.562 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.079 3.921 10 N -0.862 5.862 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.052 3.948 16 N -0.318 5.318 17 N -0.389 5.389 18 C 0.109 3.891 19 H 0.069 0.931 20 H 0.097 0.903 21 H 0.057 0.943 22 H 0.345 0.655 23 H 0.261 0.739 24 H 0.176 0.824 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -10.113 0.603 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.227 4.227 4 C 0.237 3.763 5 H 0.079 0.921 6 O -0.364 6.364 7 C -0.596 4.596 8 H 0.072 0.928 9 C -0.127 4.127 10 N -0.498 5.498 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.133 4.133 16 N -0.140 5.140 17 N -0.174 5.174 18 C -0.034 4.034 19 H 0.087 0.913 20 H 0.116 0.884 21 H 0.076 0.924 22 H 0.189 0.811 23 H 0.070 0.930 24 H 0.193 0.807 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.560 -10.990 1.100 11.059 hybrid contribution -0.238 0.799 -1.513 1.728 sum -0.798 -10.191 -0.413 10.230 Atomic orbital electron populations 1.20377 0.87899 1.03748 1.02360 1.20709 0.94318 0.86716 1.04289 1.21480 0.91966 0.98983 1.10270 1.17773 0.86985 0.78217 0.93318 0.92104 1.86564 1.23339 1.69841 1.56632 1.21579 1.47601 0.97542 0.92861 0.92793 1.25049 0.94339 0.96670 0.96650 1.70065 1.43582 1.05590 1.30526 0.86750 0.78755 0.77574 0.85370 1.20265 1.21241 1.20197 1.23551 0.98216 0.91539 1.00007 1.77143 0.96763 1.13308 1.26771 1.48259 1.04035 1.05278 1.59877 1.21609 1.00350 0.79017 1.02383 0.91256 0.88449 0.92403 0.81130 0.92952 0.80721 0.91730 0.90119 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.58 36.00 0.35 -1.04 15 2 C 0.06 1.28 6.93 -82.26 -0.57 0.71 15 3 C -0.22 -4.87 5.16 -105.05 -0.54 -5.41 15 4 C 0.30 7.60 2.84 -29.03 -0.08 7.52 15 5 H 0.06 1.69 8.01 -51.93 -0.42 1.27 15 6 O -0.56 -14.64 12.52 -35.23 -0.44 -15.08 15 7 C -0.56 -15.29 8.75 -34.44 -0.30 -15.59 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 10 N -0.86 -25.20 12.84 55.43 0.71 -24.48 15 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 15 C 0.05 1.09 11.32 -17.37 -0.20 0.89 15 16 N -0.32 -6.47 12.58 30.62 0.39 -6.09 15 17 N -0.39 -7.13 4.01 -63.89 -0.26 -7.39 15 18 C 0.11 1.35 11.09 59.84 0.66 2.02 15 19 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 20 H 0.10 1.77 7.89 -51.93 -0.41 1.36 15 21 H 0.06 0.76 7.73 -51.93 -0.40 0.36 15 22 H 0.34 7.90 8.14 45.56 0.37 8.27 15 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 24 H 0.18 3.19 7.51 -52.49 -0.39 2.80 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.08 0.80 7.67 -51.93 -0.40 0.40 15 LS Contribution 241.32 15.07 3.64 3.64 Total: -1.00 -32.68 241.32 -4.22 -36.91 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -2.46 Total: 5.21 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.78 Total: -8.82 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.84 Total: -37.96 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.44 Total: -15.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.68 -4.22 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086553414.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.416 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds