Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35316 * 126.13134 * 2 1 4 4 C 1.50703 * 126.03429 * 0.02562 * 3 2 1 5 5 H 1.09002 * 109.47207 * 35.00509 * 4 3 2 6 6 O 1.42902 * 109.46751 * 155.00407 * 4 3 2 7 7 C 1.50699 * 109.47288 * 275.00156 * 4 3 2 8 8 H 1.08001 * 120.00129 * 0.02562 * 7 4 3 9 9 C 1.37875 * 119.99860 * 180.02562 * 7 4 3 10 10 N 1.31516 * 120.00103 * 359.97438 * 9 7 4 11 11 Si 1.86804 * 119.99981 * 180.02562 * 9 7 4 12 12 H 1.48501 * 109.47003 * 59.99574 * 11 9 7 13 13 H 1.48496 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46895 * 299.99664 * 11 9 7 15 15 C 1.39868 * 107.92272 * 180.02562 * 3 2 1 16 16 N 1.30837 * 108.20148 * 359.97438 * 15 3 2 17 17 N 1.34954 * 126.12498 * 180.02562 * 2 1 3 18 18 C 1.46494 * 126.03475 * 359.71576 * 17 2 1 19 19 H 1.09004 * 109.47514 * 270.00307 * 1 2 3 20 20 H 1.09001 * 109.47090 * 30.00190 * 1 2 3 21 21 H 1.09003 * 109.47687 * 149.99726 * 1 2 3 22 22 H 0.96697 * 114.00451 * 59.99682 * 6 4 3 23 23 H 0.97002 * 119.99805 * 180.02562 * 10 9 7 24 24 H 1.08001 * 125.89990 * 179.97438 * 15 3 2 25 25 H 1.09007 * 109.47152 * 90.00174 * 18 17 2 26 26 H 1.09004 * 109.47324 * 209.99797 * 18 17 2 27 27 H 1.08997 * 109.47734 * 329.99813 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 1 0.9309 2.6154 0.5904 6 8 2.8601 3.3547 0.5697 7 6 1.5710 2.9682 -1.4146 8 1 1.7171 2.2783 -2.2326 9 6 1.1353 4.2521 -1.6651 10 7 0.9569 5.0920 -0.6689 11 14 0.7971 4.7982 -3.4192 12 1 -0.2601 3.9388 -4.0100 13 1 0.3425 6.2118 -3.4186 14 1 2.0397 4.6777 -4.2234 15 6 3.6335 0.6558 -0.0006 16 7 3.6333 -0.6525 -0.0004 17 7 2.3026 -1.0901 -0.0005 18 6 1.8538 -2.4846 0.0048 19 1 -0.3634 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3634 -0.8900 -0.5139 22 1 3.7020 3.3260 0.0950 23 1 0.6501 5.9952 -0.8452 24 1 4.5084 1.2890 -0.0011 25 1 1.7384 -2.8330 -1.0216 26 1 2.5917 -3.1019 0.5172 27 1 0.8974 -2.5566 0.5226 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086553414.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = -3.013198 kcal Electronic energy + Delta-G solvation = -12401.462714 eV Core-core repulsion = 10160.035130 eV Total energy + Delta-G solvation = -2241.427585 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07818 -37.50230 -34.31692 -34.03559 -32.98940 -29.38715 -27.48838 -27.17773 -24.31706 -21.44552 -20.30486 -18.98640 -17.53120 -16.62878 -16.38076 -16.04131 -15.14980 -15.07322 -14.66766 -13.95608 -13.67327 -13.34205 -13.29683 -13.14466 -12.85000 -12.83456 -12.72429 -12.09144 -11.69260 -11.09888 -10.69766 -10.27615 -10.02241 -9.00707 -8.04391 -6.31583 1.00179 1.43402 1.44660 1.52976 1.80107 1.99281 2.46199 3.17271 3.76730 3.96177 4.29305 4.41158 4.45443 4.52591 4.66337 4.76703 4.83955 4.89963 5.14073 5.35557 5.69031 5.76949 5.89579 6.16848 6.32561 6.77102 6.85659 7.38801 7.60214 8.96562 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.046206 B = 0.011102 C = 0.010310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.837910 B = 2521.455660 C = 2715.241167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.071 3.929 3 C -0.259 4.259 4 C 0.303 3.697 5 H 0.030 0.970 6 O -0.578 6.578 7 C -0.564 4.564 8 H 0.047 0.953 9 C 0.030 3.970 10 N -0.899 5.899 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.042 3.958 16 N -0.331 5.331 17 N -0.382 5.382 18 C 0.094 3.906 19 H 0.088 0.912 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.356 0.644 23 H 0.262 0.738 24 H 0.188 0.812 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -11.762 -0.229 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.271 4.271 4 C 0.245 3.755 5 H 0.048 0.952 6 O -0.382 6.382 7 C -0.602 4.602 8 H 0.066 0.934 9 C -0.173 4.173 10 N -0.536 5.536 11 Si 0.780 3.220 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.142 4.142 16 N -0.154 5.154 17 N -0.167 5.167 18 C -0.046 4.046 19 H 0.107 0.893 20 H 0.090 0.910 21 H 0.114 0.886 22 H 0.202 0.798 23 H 0.071 0.929 24 H 0.205 0.795 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.093 -12.683 0.263 12.732 hybrid contribution -0.082 1.198 -1.209 1.704 sum -1.175 -11.485 -0.946 11.584 Atomic orbital electron populations 1.20447 0.85535 1.04335 1.03793 1.21133 0.95829 0.86609 1.02012 1.21230 0.93486 0.98059 1.14286 1.17428 0.85984 0.80320 0.91793 0.95235 1.86489 1.24097 1.70511 1.57127 1.21798 1.47240 0.97619 0.93567 0.93450 1.25830 0.94048 0.96711 1.00677 1.70193 1.44762 1.05930 1.32753 0.85689 0.78763 0.77228 0.80331 1.19322 1.20831 1.19788 1.23748 0.98200 0.92051 1.00197 1.77082 0.98256 1.12814 1.27202 1.48678 1.03090 1.07016 1.57880 1.22129 1.02186 0.75910 1.04337 0.89336 0.90966 0.88614 0.79845 0.92927 0.79484 0.89868 0.88694 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.52 9.58 71.23 0.68 -1.84 15 2 C 0.07 2.73 6.93 41.40 0.29 3.02 15 3 C -0.26 -11.73 5.16 -20.14 -0.10 -11.83 15 4 C 0.30 15.99 2.84 29.10 0.08 16.07 15 5 H 0.03 1.72 8.01 -2.39 -0.02 1.70 15 6 O -0.58 -30.97 12.52 -148.98 -1.87 -32.83 15 7 C -0.56 -31.32 8.75 25.60 0.22 -31.10 15 8 H 0.05 2.64 7.74 -2.91 -0.02 2.61 15 9 C 0.03 1.65 5.40 84.65 0.46 2.11 15 10 N -0.90 -53.41 12.84 21.45 0.28 -53.14 15 11 Si 0.96 43.41 29.54 68.60 2.03 45.43 15 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 15 C 0.04 1.75 11.32 85.24 0.97 2.72 15 16 N -0.33 -13.02 12.58 -57.02 -0.72 -13.74 15 17 N -0.38 -13.08 4.01 -356.04 -1.43 -14.51 15 18 C 0.09 1.97 11.09 127.77 1.42 3.39 15 19 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 20 H 0.07 2.60 7.89 -2.39 -0.02 2.58 15 21 H 0.10 2.15 7.73 -2.39 -0.02 2.14 15 22 H 0.36 16.75 8.14 -74.06 -0.60 16.15 15 23 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 24 H 0.19 6.89 7.51 -2.91 -0.02 6.87 15 25 H 0.08 1.50 8.14 -2.38 -0.02 1.48 15 26 H 0.09 1.76 8.14 -2.38 -0.02 1.74 15 27 H 0.11 1.67 7.67 -2.39 -0.02 1.65 15 Total: -1.00 -70.25 241.32 2.87 -67.38 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.57 Total: 18.88 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.01 Total: -17.46 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -1.87 Total: -81.39 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.87 Total: -32.83 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.25 2.87 -67.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086553414.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.364 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds