Wall clock time and date at job start Mon Mar 30 2020 02:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46940 * 2 1 4 4 N 1.46503 * 109.46677 * 119.99802 * 2 1 3 5 5 C 1.38565 * 125.99929 * 300.02210 * 4 2 1 6 6 C 1.33145 * 107.86714 * 179.74336 * 5 4 2 7 7 N 1.38367 * 107.91497 * 359.97438 * 6 5 4 8 8 C 1.37286 * 125.96587 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00560 * 179.97438 * 8 7 6 10 10 C 1.38794 * 119.99467 * 359.97438 * 8 7 6 11 11 N 1.31465 * 120.00521 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99566 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47430 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46967 * 119.99962 * 12 10 8 15 15 H 1.48495 * 109.46976 * 239.99558 * 12 10 8 16 16 C 1.34749 * 108.08055 * 0.02562 * 7 6 5 17 17 O 1.21709 * 125.93861 * 180.02562 * 16 7 6 18 18 H 1.09004 * 109.47392 * 300.00394 * 1 2 3 19 19 H 1.09004 * 109.47207 * 60.00192 * 1 2 3 20 20 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47211 * 239.99940 * 2 1 3 22 22 H 1.08997 * 109.46791 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47013 * 299.99926 * 3 2 1 24 24 H 1.09001 * 109.47149 * 60.00077 * 3 2 1 25 25 H 1.08001 * 126.06304 * 359.72054 * 5 4 2 26 26 H 1.07999 * 126.04479 * 179.97438 * 6 5 4 27 27 H 0.96990 * 120.00349 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7609 -0.3274 2.5084 6 6 2.3734 -1.2033 3.3024 7 7 3.0209 -2.1254 2.4993 8 6 3.7669 -3.1919 2.9362 9 1 4.2321 -3.8546 2.2215 10 6 3.9234 -3.4183 4.2966 11 7 3.3568 -2.6120 5.1667 12 14 4.9379 -4.8699 4.8911 13 1 5.4640 -5.6184 3.7215 14 1 6.0719 -4.3773 5.7137 15 1 4.0849 -5.7673 5.7109 16 6 2.7916 -1.7942 1.2135 17 8 3.2095 -2.3887 0.2372 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.1688 0.5167 2.8300 26 1 2.3661 -1.1954 4.3823 27 1 3.4659 -2.7705 6.1174 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:41 Heat of formation + Delta-G solvation = -6.064049 kcal Electronic energy + Delta-G solvation = -12556.226907 eV Core-core repulsion = 10314.667027 eV Total energy + Delta-G solvation = -2241.559880 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.80356 -37.49830 -37.36046 -34.92867 -32.36288 -29.40454 -28.08303 -27.17028 -23.56508 -22.58587 -20.65758 -19.66571 -17.67216 -16.92031 -16.82606 -16.02286 -15.58091 -15.08004 -14.89889 -14.25246 -13.91555 -13.48108 -13.12743 -13.09096 -12.87682 -12.54074 -12.49293 -12.33057 -12.11757 -11.88248 -11.39405 -11.00358 -10.39298 -8.45754 -8.43211 -6.22400 1.37301 1.38763 1.54281 1.87688 1.92272 2.19137 2.31755 3.13516 3.48419 3.83651 4.15832 4.25422 4.52543 4.72646 4.76854 4.89994 5.00594 5.04382 5.11335 5.27785 5.33730 5.37606 5.66797 6.09117 6.20549 6.76625 7.03097 7.33379 7.99221 8.52832 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.069302 B = 0.010476 C = 0.009685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.934410 B = 2672.217143 C = 2890.394663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.138 3.862 3 C -0.147 4.147 4 N -0.514 5.514 5 C -0.085 4.085 6 C -0.007 4.007 7 N -0.375 5.375 8 C -0.355 4.355 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.885 5.885 12 Si 1.015 2.985 13 H -0.273 1.273 14 H -0.262 1.262 15 H -0.262 1.262 16 C 0.551 3.449 17 O -0.673 6.673 18 H 0.077 0.923 19 H 0.101 0.899 20 H 0.036 0.964 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.207 0.793 26 H 0.205 0.795 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 7.468 -1.174 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 C -0.204 4.204 4 N -0.233 5.233 5 C -0.209 4.209 6 C -0.137 4.137 7 N -0.075 5.075 8 C -0.482 4.482 9 H 0.101 0.899 10 C -0.199 4.199 11 N -0.521 5.521 12 Si 0.836 3.164 13 H -0.198 1.198 14 H -0.186 1.186 15 H -0.186 1.186 16 C 0.256 3.744 17 O -0.563 6.563 18 H 0.096 0.904 19 H 0.120 0.880 20 H 0.056 0.944 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.120 0.880 24 H 0.096 0.904 25 H 0.224 0.776 26 H 0.221 0.779 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.974 7.070 -1.645 8.799 hybrid contribution 0.593 -0.846 0.193 1.051 sum -4.381 6.224 -1.452 7.748 Atomic orbital electron populations 1.22079 0.91863 1.01937 1.04588 1.21316 0.96268 0.93892 0.84899 1.22074 1.00516 0.93267 1.04586 1.45375 1.45398 1.24795 1.07706 1.22006 1.12106 1.05955 0.80822 1.23436 0.98967 0.90785 1.00480 1.41383 1.38797 1.22519 1.04846 1.19818 1.30012 1.05274 0.93063 0.89860 1.26263 0.97808 1.01596 0.94218 1.69605 1.41962 1.37272 1.03294 0.84578 0.77606 0.76133 0.78099 1.19785 1.18635 1.18624 1.16679 0.87896 0.85607 0.84223 1.90695 1.65227 1.62314 1.38031 0.90442 0.88033 0.94431 0.91316 0.94403 0.88028 0.90447 0.77614 0.77928 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.25 71.98 0.67 -3.09 15 2 C 0.14 4.65 3.56 44.99 0.16 4.81 15 3 C -0.15 -3.74 9.25 71.98 0.67 -3.08 15 4 N -0.51 -22.97 2.62 -633.59 -1.66 -24.63 15 5 C -0.09 -3.49 10.51 82.48 0.87 -2.62 15 6 C -0.01 -0.37 10.29 82.51 0.85 0.48 15 7 N -0.37 -21.93 2.89 -481.96 -1.40 -23.33 15 8 C -0.35 -21.31 10.03 83.97 0.84 -20.47 15 9 H 0.08 5.23 7.79 -2.91 -0.02 5.21 15 10 C 0.00 0.18 5.48 84.88 0.46 0.65 15 11 N -0.89 -45.93 10.11 21.64 0.22 -45.71 15 12 Si 1.02 41.76 29.55 68.60 2.03 43.79 15 13 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 15 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 16 C 0.55 31.95 8.46 179.07 1.51 33.46 15 17 O -0.67 -43.55 17.38 -4.38 -0.08 -43.63 15 18 H 0.08 1.74 7.94 -2.39 -0.02 1.72 15 19 H 0.10 1.85 8.14 -2.38 -0.02 1.83 15 20 H 0.04 1.11 8.14 -2.39 -0.02 1.10 15 21 H 0.07 2.62 7.73 -2.39 -0.02 2.60 15 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.10 1.85 8.14 -2.38 -0.02 1.83 15 24 H 0.08 1.73 7.94 -2.39 -0.02 1.71 15 25 H 0.21 6.07 8.06 -2.91 -0.02 6.05 15 26 H 0.20 10.17 5.48 -2.91 -0.02 10.16 15 27 H 0.28 13.32 8.31 -92.72 -0.77 12.55 15 Total: -1.00 -73.36 236.51 6.29 -67.07 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.15 Total: 16.31 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.03 Total: 10.13 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -2.84 Total: -93.67 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -0.08 Total: -43.63 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -73.36 6.29 -67.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.002 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds