Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.86066 * 2 1 4 4 N 1.40070 * 108.34374 * 180.16313 * 3 2 1 5 5 C 1.46491 * 126.03500 * 179.81925 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68860 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.35133 * 107.92673 * 359.55540 * 4 3 2 15 15 O 1.35748 * 126.19549 * 180.23971 * 14 4 3 16 16 C 1.35951 * 107.61175 * 0.26442 * 14 4 3 17 17 C 1.50708 * 126.08102 * 180.02562 * 16 14 4 18 18 H 1.09007 * 109.46788 * 270.32237 * 1 2 3 19 19 H 1.08994 * 109.47501 * 30.32341 * 1 2 3 20 20 H 1.09003 * 109.46986 * 150.33103 * 1 2 3 21 21 H 1.09004 * 109.47166 * 149.69126 * 5 4 3 22 22 H 1.08994 * 109.47507 * 29.68832 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 0.96711 * 114.00115 * 90.02527 * 15 14 4 25 25 H 1.08999 * 109.47101 * 89.97119 * 17 16 14 26 26 H 1.09000 * 109.46465 * 209.97368 * 17 16 14 27 27 H 1.08995 * 109.47027 * 329.96905 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0603 0.0000 4 7 3.6092 0.6387 -0.0038 5 6 4.7876 1.5090 -0.0088 6 6 5.1916 1.7993 -1.4313 7 1 4.6268 1.3780 -2.2498 8 6 6.2785 2.6079 -1.6880 9 7 6.9661 3.1212 -0.6913 10 14 6.7746 2.9739 -3.4512 11 1 5.6523 3.6489 -4.1513 12 1 7.9663 3.8601 -3.4564 13 1 7.1001 1.7035 -4.1479 14 6 3.6189 -0.7125 0.0039 15 8 4.7201 -1.5063 0.0079 16 6 2.3261 -1.1332 0.0063 17 6 1.8589 -2.5660 0.0151 18 1 -0.3633 0.0058 1.0277 19 1 -0.3634 0.8870 -0.5188 20 1 -0.3633 -0.8930 -0.5087 21 1 5.6086 1.0119 0.5078 22 1 4.5512 2.4437 0.4997 23 1 7.7310 3.6898 -0.8718 24 1 5.0394 -1.7316 0.8926 25 1 1.7467 -2.9053 1.0448 26 1 0.9000 -2.6385 -0.4980 27 1 2.5922 -3.1903 -0.4953 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116396733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = 19.402033 kcal Electronic energy + Delta-G solvation = -12214.319860 eV Core-core repulsion = 9973.864273 eV Total energy + Delta-G solvation = -2240.455587 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.63948 -36.63887 -34.07177 -32.39825 -30.52962 -29.07204 -26.52158 -25.20673 -22.41608 -20.36247 -19.06842 -17.24537 -16.74238 -15.41008 -14.77782 -14.26474 -13.71585 -13.29978 -12.77147 -12.60037 -12.51367 -12.06333 -11.85078 -11.75496 -11.56940 -11.04691 -10.86444 -10.73877 -10.20770 -9.74929 -9.57772 -8.61594 -8.25552 -7.53730 -6.23919 -4.30345 2.53821 3.21655 3.26379 3.28828 3.31588 3.40770 4.32196 4.67288 5.09913 5.26193 5.59689 5.64464 5.89443 5.91230 6.04738 6.19818 6.34306 6.41238 6.61920 6.93310 7.01869 7.32780 7.46797 7.71698 7.90082 8.27313 8.55455 8.75894 9.35305 10.84235 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047736 B = 0.009830 C = 0.009292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.414856 B = 2847.632432 C = 3012.503423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 N -0.280 5.280 4 N -0.334 5.334 5 C 0.257 3.743 6 C -0.533 4.533 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.894 5.894 10 Si 0.909 3.091 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.261 3.739 15 O -0.462 6.462 16 C -0.280 4.280 17 C -0.058 4.058 18 H 0.069 0.931 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.268 0.732 24 H 0.387 0.613 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -8.148 2.898 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.108 5.108 4 N -0.123 5.123 5 C 0.139 3.861 6 C -0.572 4.572 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.532 5.532 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.088 3.912 15 O -0.264 6.264 16 C -0.292 4.292 17 C -0.116 4.116 18 H 0.087 0.913 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.242 0.758 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.123 -6.697 2.332 10.051 hybrid contribution 0.735 -0.570 -0.422 1.022 sum -6.388 -7.267 1.909 9.862 Atomic orbital electron populations 1.20044 0.87551 1.02561 1.02107 1.21817 0.96384 0.90400 1.02340 1.77370 0.86529 1.22023 1.24838 1.49827 1.06435 1.04446 1.51566 1.19665 0.77863 0.89417 0.99156 1.21252 1.13508 1.31203 0.91233 0.91868 1.24926 0.95605 0.94985 0.98296 1.69910 1.19319 1.32775 1.31213 0.86376 0.78002 0.78431 0.83652 1.19909 1.20905 1.19927 1.18519 0.86924 0.82590 1.03135 1.84880 1.43577 1.65059 1.32842 1.19522 0.90797 0.96601 1.22329 1.19868 1.00311 0.91020 1.00418 0.91279 0.91338 0.91113 0.93224 0.92837 0.92224 0.75797 0.93156 0.92482 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.26 36.01 0.37 -0.53 15 2 C 0.05 1.05 7.21 -82.43 -0.59 0.46 15 3 N -0.28 -6.54 12.57 33.66 0.42 -6.12 15 4 N -0.33 -8.13 3.60 -62.67 -0.23 -8.35 15 5 C 0.26 6.85 6.14 -5.20 -0.03 6.82 15 6 C -0.53 -15.47 9.39 -34.44 -0.32 -15.80 15 7 H 0.06 1.90 7.81 -52.49 -0.41 1.49 15 8 C 0.06 1.84 5.46 -17.82 -0.10 1.74 15 9 N -0.89 -25.89 13.29 55.43 0.74 -25.16 15 10 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 15 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 14 C 0.26 5.60 7.92 -16.92 -0.13 5.47 15 15 O -0.46 -8.79 13.53 -18.95 -0.26 -9.05 15 16 C -0.28 -5.30 6.12 -104.85 -0.64 -5.94 15 17 C -0.06 -0.83 10.15 36.01 0.37 -0.46 15 18 H 0.07 0.83 8.14 -51.92 -0.42 0.41 15 19 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.07 0.83 7.25 -51.93 -0.38 0.45 15 21 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.05 1.50 8.14 -51.93 -0.42 1.07 15 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.39 5.16 9.06 45.56 0.41 5.57 15 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 26 H 0.06 0.71 7.25 -51.93 -0.38 0.33 15 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 245.03 15.07 3.69 3.69 Total: -1.00 -32.43 245.03 -4.16 -36.59 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -2.42 Total: -0.22 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.09 Total: -8.24 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.93 Total: -39.63 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.26 Total: -9.05 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.43 -4.16 -36.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116396733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.994 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds