Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.86066 * 2 1 4 4 N 1.40070 * 108.34374 * 180.16313 * 3 2 1 5 5 C 1.46491 * 126.03500 * 179.81925 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68860 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.35133 * 107.92673 * 359.55540 * 4 3 2 15 15 O 1.35748 * 126.19549 * 180.23971 * 14 4 3 16 16 C 1.35951 * 107.61175 * 0.26442 * 14 4 3 17 17 C 1.50708 * 126.08102 * 180.02562 * 16 14 4 18 18 H 1.09007 * 109.46788 * 270.32237 * 1 2 3 19 19 H 1.08994 * 109.47501 * 30.32341 * 1 2 3 20 20 H 1.09003 * 109.46986 * 150.33103 * 1 2 3 21 21 H 1.09004 * 109.47166 * 149.69126 * 5 4 3 22 22 H 1.08994 * 109.47507 * 29.68832 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 0.96711 * 114.00115 * 90.02527 * 15 14 4 25 25 H 1.08999 * 109.47101 * 89.97119 * 17 16 14 26 26 H 1.09000 * 109.46465 * 209.97368 * 17 16 14 27 27 H 1.08995 * 109.47027 * 329.96905 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0603 0.0000 4 7 3.6092 0.6387 -0.0038 5 6 4.7876 1.5090 -0.0088 6 6 5.1916 1.7993 -1.4313 7 1 4.6268 1.3780 -2.2498 8 6 6.2785 2.6079 -1.6880 9 7 6.9661 3.1212 -0.6913 10 14 6.7746 2.9739 -3.4512 11 1 5.6523 3.6489 -4.1513 12 1 7.9663 3.8601 -3.4564 13 1 7.1001 1.7035 -4.1479 14 6 3.6189 -0.7125 0.0039 15 8 4.7201 -1.5063 0.0079 16 6 2.3261 -1.1332 0.0063 17 6 1.8589 -2.5660 0.0151 18 1 -0.3633 0.0058 1.0277 19 1 -0.3634 0.8870 -0.5188 20 1 -0.3633 -0.8930 -0.5087 21 1 5.6086 1.0119 0.5078 22 1 4.5512 2.4437 0.4997 23 1 7.7310 3.6898 -0.8718 24 1 5.0394 -1.7316 0.8926 25 1 1.7467 -2.9053 1.0448 26 1 0.9000 -2.6385 -0.4980 27 1 2.5922 -3.1903 -0.4953 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116396733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -5.301337 kcal Electronic energy + Delta-G solvation = -12215.391079 eV Core-core repulsion = 9973.864273 eV Total energy + Delta-G solvation = -2241.526806 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.23571 -38.16099 -35.98988 -34.24499 -31.93752 -30.76323 -28.11335 -26.90002 -24.27750 -21.95599 -20.61106 -18.90403 -18.83079 -17.23979 -16.42045 -16.09814 -15.13449 -14.81658 -14.57331 -14.06315 -13.73766 -13.54751 -13.48521 -13.19002 -12.87714 -12.82949 -12.73750 -12.45303 -12.11818 -11.76990 -11.13934 -10.78125 -9.95804 -9.11439 -8.38899 -6.56609 0.92521 1.33282 1.36163 1.44587 1.66255 1.80361 2.30511 2.90638 3.19531 3.79591 4.29145 4.40034 4.65599 4.75880 4.80044 4.87651 4.99775 5.10976 5.23888 5.27495 5.35621 5.46007 5.75260 5.87186 5.95336 6.47743 6.78323 6.95950 7.14706 8.67800 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047736 B = 0.009830 C = 0.009292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.414856 B = 2847.632432 C = 3012.503423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.059 3.941 3 N -0.329 5.329 4 N -0.367 5.367 5 C 0.274 3.726 6 C -0.559 4.559 7 H 0.044 0.956 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.975 3.025 11 H -0.271 1.271 12 H -0.267 1.267 13 H -0.269 1.269 14 C 0.243 3.757 15 O -0.470 6.470 16 C -0.273 4.273 17 C -0.054 4.054 18 H 0.093 0.907 19 H 0.068 0.932 20 H 0.101 0.899 21 H 0.041 0.959 22 H 0.027 0.973 23 H 0.275 0.725 24 H 0.410 0.590 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -9.485 2.288 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.156 5.156 4 N -0.157 5.157 5 C 0.155 3.845 6 C -0.597 4.597 7 H 0.063 0.937 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.798 3.202 11 H -0.197 1.197 12 H -0.192 1.192 13 H -0.194 1.194 14 C 0.072 3.928 15 O -0.276 6.276 16 C -0.286 4.286 17 C -0.112 4.112 18 H 0.111 0.889 19 H 0.087 0.913 20 H 0.120 0.880 21 H 0.059 0.941 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.268 0.732 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.232 -8.064 1.750 11.656 hybrid contribution 1.009 -0.234 -0.165 1.049 sum -7.223 -8.298 1.585 11.115 Atomic orbital electron populations 1.20284 0.83541 1.04127 1.04131 1.22803 0.98712 0.89555 0.99401 1.77303 0.86545 1.24405 1.27371 1.49592 1.06196 1.05259 1.54648 1.19121 0.78935 0.88798 0.97686 1.21413 1.14216 1.32247 0.91810 0.93732 1.25798 0.95185 0.94294 1.02756 1.69992 1.19586 1.32841 1.33262 0.85361 0.78061 0.78565 0.78230 1.19660 1.19174 1.19374 1.19020 0.88489 0.81857 1.03470 1.84813 1.43304 1.64392 1.35058 1.20143 0.89519 0.98874 1.20046 1.19992 1.01292 0.87539 1.02366 0.88860 0.91278 0.88045 0.94081 0.95539 0.91600 0.73194 0.90740 0.90024 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.54 10.26 71.24 0.73 -0.81 15 2 C 0.06 2.23 7.21 43.09 0.31 2.54 15 3 N -0.33 -15.62 12.57 -47.42 -0.60 -16.21 15 4 N -0.37 -18.43 3.60 -463.52 -1.67 -20.10 15 5 C 0.27 15.33 6.14 85.64 0.53 15.85 15 6 C -0.56 -33.47 9.39 25.60 0.24 -33.23 15 7 H 0.04 2.77 7.81 -2.91 -0.02 2.74 15 8 C 0.02 1.18 5.46 84.66 0.46 1.64 15 9 N -0.92 -53.96 13.29 21.45 0.28 -53.67 15 10 Si 0.97 44.93 29.54 68.60 2.03 46.96 15 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 14 C 0.24 10.41 7.92 83.65 0.66 11.07 15 15 O -0.47 -17.83 13.53 -90.73 -1.23 -19.05 15 16 C -0.27 -9.86 6.12 -20.01 -0.12 -9.98 15 17 C -0.05 -1.34 10.15 71.24 0.72 -0.62 15 18 H 0.09 1.90 8.14 -2.38 -0.02 1.88 15 19 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 20 H 0.10 1.89 7.25 -2.39 -0.02 1.88 15 21 H 0.04 2.30 8.14 -2.38 -0.02 2.28 15 22 H 0.03 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.27 14.99 8.31 -92.70 -0.77 14.22 15 24 H 0.41 10.74 9.06 -74.05 -0.67 10.07 15 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.08 1.64 7.25 -2.39 -0.02 1.62 15 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 Total: -1.00 -71.47 245.03 2.86 -68.61 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.51 Total: 6.99 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.53 Total: -13.53 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.98 Total: -89.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.23 Total: -19.05 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.47 2.86 -68.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116396733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.313 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds